REACTIN: Regulatory activity inference of transcription factors underlying human diseases with application to breast cancer

por Zhu, Mingzhu, Liu, Chun-Chi, Cheng, Chao
Publicado 2013

Integrative analysis of cancer genes in a functional interactome

por Ung, Matthew H., Liu, Chun-Chi, Cheng, Chao
Publicado 2016

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data

por Li, Wenyuan, Zhang, Shihua, Liu, Chun-Chi, Zhou, Xianghong Jasmine
Publicado 2012

Integrative disease classification based on cross-platform microarray data

por Liu, Chun-Chi, Hu, Jianjun, Kalakrishnan, Mrinal, Huang, Haiyan, Zhou, Xianghong Jasmine
Publicado 2009

Plant stress RNA-seq Nexus: a stress-specific transcriptome database in plant cells

por Li, Jian-Rong, Liu, Chun-Chi, Sun, Chuan-Hu, Chen, Yu-Ting
Publicado 2018

Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation

por Li, Wenyuan, Liu, Chun-Chi, Zhang, Tong, Li, Haifeng, Waterman, Michael S., Zhou, Xianghong Jasmine
Publicado 2011

Improved n-butanol production via co-expression of membrane-targeted tilapia metallothionein and the clostridial metabolic pathway in Escherichia coli

por Chin, Wei-Chih, Lin, Kuo-Hsing, Liu, Chun-Chi, Tsuge, Kenji, Huang, Chieh-Chen
Publicado 2017

Joint Genome-Wide Profiling of miRNA and mRNA Expression in Alzheimer's Disease Cortex Reveals Altered miRNA Regulation

por Nunez-Iglesias, Juan, Liu, Chun-Chi, Morgan, Todd E., Finch, Caleb E., Zhou, Xianghong Jasmine
Publicado 2010

Discovery of multi-dimensional modules by integrative analysis of cancer genomic data

por Zhang, Shihua, Liu, Chun-Chi, Li, Wenyuan, Shen, Hui, Laird, Peter W., Zhou, Xianghong Jasmine
Publicado 2012

DPRP: a database of phenotype-specific regulatory programs derived from transcription factor binding data

por Tzeng, David T. W., Tseng, Yu-Ting, Ung, Matthew, Liao, I-En, Liu, Chun-Chi, Cheng, Chao
Publicado 2014

High-resolution functional annotation of human transcriptome: predicting isoform functions by a novel multiple instance-based label propagation method

por Li, Wenyuan, Kang, Shuli, Liu, Chun-Chi, Zhang, Shihua, Shi, Yi, Liu, Yan, Zhou, Xianghong Jasmine
Publicado 2014

Metabolic Pathways Enhancement Confers Poor Prognosis in p53 Exon Mutant Hepatocellular Carcinoma

por Chen, Po-Ming, Li, Jian-Rong, Liu, Chun-Chi, Tang, Feng-Yao, Chiang, En-Pei Isabel
Publicado 2020

Biclustering of transcriptome sequencing data reveals human tissue-specific circular RNAs

por Liu, Yu-Chen, Chiu, Yu-Jung, Li, Jian-Rong, Sun, Chuan-Hu, Liu, Chun-Chi, Huang, Hsien-Da
Publicado 2018

IIIDB: a database for isoform-isoform interactions and isoform network modules

por Tseng, Yu-Ting, Li, Wenyuan, Chen, Ching-Hsien, Zhang, Shihua, Chen, Jeremy JW, Zhou, Xianghong Jasmine, Liu, Chun-Chi
Publicado 2015

Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells

por Li, Jian-Rong, Sun, Chuan-Hu, Li, Wenyuan, Chao, Rou-Fang, Huang, Chieh-Chen, Zhou, Xianghong Jasmine, Liu, Chun-Chi
Publicado 2016

Inferring condition-specific targets of human TF-TF complexes using ChIP-seq data

por Yang, Chia-Chun, Chen, Min-Hsuan, Lin, Sheng-Yi, Andrews, Erik H., Cheng, Chao, Liu, Chun-Chi, Chen, Jeremy J.W.
Publicado 2017

CRSD: a comprehensive web server for composite regulatory signature discovery

por Liu, Chun-Chi, Lin, Chin-Chung, Chen, Wen-Shyen E., Chen, Hsuan-Yu, Chang, Pei-Chun, Chen, Jeremy J.W., Yang, Pan-Chyr
Publicado 2006

Discovering chromatin motifs using FAIRE sequencing and the human diploid genome

por Yang, Chia-Chun, Buck, Michael J, Chen, Min-Hsuan, Chen, Yun-Fan, Lan, Hsin-Chi, Chen, Jeremy JW, Cheng, Chao, Liu, Chun-Chi
Publicado 2013

iTAR: a web server for identifying target genes of transcription factors using ChIP-seq or ChIP-chip data

por Yang, Chia-Chun, Andrews, Erik H., Chen, Min-Hsuan, Wang, Wan-Yu, Chen, Jeremy J. W., Gerstein, Mark, Liu, Chun-Chi, Cheng, Chao
Publicado 2016

An Association of Gut Microbiota with Different Phenotypes in Chinese Patients with Rheumatoid Arthritis

por Chiang, Hsin-I, Li, Jian-Rong, Liu, Chun-Chi, Liu, Po-Yu, Chen, Hsin-Hua, Chen, Yi-Ming, Lan, Joung-Liang, Chen, Der-Yuan
Publicado 2019