Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli

por Du, Bin, Yang, Laurence, Lloyd, Colton J., Fang, Xin, Palsson, Bernhard O.
Publicado 2019

Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth

por Lloyd, Colton J., Monk, Jonathan, Yang, Laurence, Ebrahim, Ali, Palsson, Bernhard O.
Publicado 2021

DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression

por Yang, Laurence, Ebrahim, Ali, Lloyd, Colton J., Saunders, Michael A., Palsson, Bernhard O.
Publicado 2019

Pangenome analysis of Enterobacteria reveals richness of secondary metabolite gene clusters and their associated gene sets

por Mohite, Omkar S., Lloyd, Colton J., Monk, Jonathan M., Weber, Tilmann, Palsson, Bernhard O.
Publicado 2022

solveME: fast and reliable solution of nonlinear ME models

por Yang, Laurence, Ma, Ding, Ebrahim, Ali, Lloyd, Colton J., Saunders, Michael A., Palsson, Bernhard O.
Publicado 2016

Principles of proteome allocation are revealed using proteomic data and genome-scale models

por Yang, Laurence, Yurkovich, James T., Lloyd, Colton J., Ebrahim, Ali, Saunders, Michael A., Palsson, Bernhard O.
Publicado 2016

COBRAme: A computational framework for genome-scale models of metabolism and gene expression

por Lloyd, Colton J., Ebrahim, Ali, Yang, Laurence, King, Zachary A., Catoiu, Edward, O’Brien, Edward J., Liu, Joanne K., Palsson, Bernhard O.
Publicado 2018

Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models

por Heckmann, David, Lloyd, Colton J., Mih, Nathan, Ha, Yuanchi, Zielinski, Daniel C., Haiman, Zachary B., Desouki, Abdelmoneim Amer, Lercher, Martin J., Palsson, Bernhard O.
Publicado 2018

Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers

por Heckmann, David, Campeau, Anaamika, Lloyd, Colton J., Phaneuf, Patrick V., Hefner, Ying, Carrillo-Terrazas, Marvic, Feist, Adam M., Gonzalez, David J., Palsson, Bernhard O.
Publicado 2020

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data

por Lachance, Jean-Christophe, Lloyd, Colton J., Monk, Jonathan M., Yang, Laurence, Sastry, Anand V., Seif, Yara, Palsson, Bernhard O., Rodrigue, Sébastien, Feist, Adam M., King, Zachary A., Jacques, Pierre-Étienne
Publicado 2019

Genome‐scale metabolic modeling reveals key features of a minimal gene set

por Lachance, Jean‐Christophe, Matteau, Dominick, Brodeur, Joëlle, Lloyd, Colton J, Mih, Nathan, King, Zachary A, Knight, Thomas F, Feist, Adam M, Monk, Jonathan M, Palsson, Bernhard O, Jacques, Pierre‐Étienne, Rodrigue, Sébastien
Publicado 2021

The genetic basis for adaptation of model-designed syntrophic co-cultures

por Lloyd, Colton J., King, Zachary A., Sandberg, Troy E., Hefner, Ying, Olson, Connor A., Phaneuf, Patrick V., O’Brien, Edward J., Sanders, Jon G., Salido, Rodolfo A., Sanders, Karenina, Brennan, Caitriona, Humphrey, Gregory, Knight, Rob, Feist, Adam M.
Publicado 2019