Rapid evaluation and quality control of next generation sequencing data with FaQCs

por Lo, Chien-Chi, Chain, Patrick S G
Publicado 2014

Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs

por Scholz, Matthew, Lo, Chien-Chi, Chain, Patrick S. G.
Publicado 2014

Advances and Challenges in Metatranscriptomic Analysis

por Shakya, Migun, Lo, Chien-Chi, Chain, Patrick S. G.
Publicado 2019

Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes

por Xie, Gary, Lo, Chien-Chi, Scholz, Matthew, Chain, Patrick S. G.
Publicado 2014

ADEPT, a dynamic next generation sequencing data error-detection program with trimming

por Feng, Shihai, Lo, Chien-Chi, Li, Po-E, Chain, Patrick S. G.
Publicado 2016

Comparative Genomics Applied to Systematically Assess Pathogenicity Potential in Shiga Toxin-Producing Escherichia coli O145:H28

por Carter, Michelle Qiu, Laniohan, Nicole, Lo, Chien-Chi, Chain, Patrick S. G.
Publicado 2022

CRP-Mediated Carbon Catabolite Regulation of Yersinia pestis Biofilm Formation Is Enhanced by the Carbon Storage Regulator Protein, CsrA

por Willias, Stephan P., Chauhan, Sadhana, Lo, Chien-Chi, Chain, Patrick S. G., Motin, Vladimir L.
Publicado 2015

Under-detection of endospore-forming Firmicutes in metagenomic data

por Filippidou, Sevasti, Junier, Thomas, Wunderlin, Tina, Lo, Chien-Chi, Li, Po-E, Chain, Patrick S., Junier, Pilar
Publicado 2015

Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life

por Shakya, Migun, Ahmed, Sanaa A., Davenport, Karen W., Flynn, Mark C., Lo, Chien-Chi, Chain, Patrick S. G.
Publicado 2020

The Gut Microbiome and Alcoholic Liver Disease: Ethanol Consumption Drives Consistent and Reproducible Alteration in Gut Microbiota in Mice

por LeBrun, Erick S., Nighot, Meghali, Dharmaprakash, Viszwapriya, Kumar, Anand, Lo, Chien-Chi, Chain, Patrick S. G., Ma, Thomas Y.
Publicado 2020

First Complete Genome Sequence of Felis catus Gammaherpesvirus 1

por Troyer, Ryan M., Lee, Justin S., Vuyisich, Momchilo, Chain, Patrick, Lo, Chien-Chi, Kronmiller, Brent, Bracha, Shay, Avery, Anne C., VandeWoude, Sue
Publicado 2015

Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater

por Wang, Dongping, Boukhalfa, Hakim, Marina, Oana, Ware, Doug S., Goering, Tim J., Sun, Fengjie, Daligault, Hajnalka E., Lo, Chien‐Chi, Vuyisich, Momchilo, Starkenburg, Shawn R.
Publicado 2016

Bioinformatic and Mechanistic Analysis of the Palmerolide PKS-NRPS Biosynthetic Pathway From the Microbiome of an Antarctic Ascidian

por Avalon, Nicole E., Murray, Alison E., Daligault, Hajnalka E., Lo, Chien-Chi, Davenport, Karen W., Dichosa, Armand E. K., Chain, Patrick S. G., Baker, Bill J.
Publicado 2021

Genomic and Phenotypic Characterization of Shiga Toxin-Producing Escherichia albertii Strains Isolated from Wild Birds in a Major Agricultural Region in California

por Carter, Michelle Qiu, Quiñones, Beatriz, He, Xiaohua, Pham, Antares, Carychao, Diana, Cooley, Michael B., Lo, Chien-Chi, Chain, Patrick S. G., Lindsey, Rebecca L., Bono, James L.
Publicado 2023

Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent

por Filippidou, Sevasti, Wunderlin, Tina, Junier, Thomas, Jeanneret, Nicole, Johnson, Shannon, McMurry, Kim, Gleasner, Cheryl D., Lo, Chien-Chi, Li, Po-E, Vuyisich, Momchilo, Chain, Patrick S., Junier, Pilar
Publicado 2015

EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts

por Lo, Chien-Chi, Shakya, Migun, Connor, Ryan, Davenport, Karen, Flynn, Mark, Gutiérrez, Adán Myers y, Hu, Bin, Li, Po-E, Jackson, Elais Player, Xu, Yan, Chain, Patrick S G
Publicado 2022

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

por Li, Po-E, Lo, Chien-Chi, Anderson, Joseph J., Davenport, Karen W., Bishop-Lilly, Kimberly A., Xu, Yan, Ahmed, Sanaa, Feng, Shihai, Mokashi, Vishwesh P., Chain, Patrick S.G.
Publicado 2017

A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays

por Li, Po-E, Myers y Gutiérrez, Adán, Davenport, Karen, Flynn, Mark, Hu, Bin, Lo, Chien-Chi, Player Jackson, Elais, Shakya, Migun, Xu, Yan, Gans, Jason D, Chain, Patrick S G
Publicado 2020

Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach

por Gontang, Erin A., Aylward, Frank O., Carlos, Camila, Glavina del Rio, Tijana, Chovatia, Mansi, Fern, Alison, Lo, Chien-Chi, Malfatti, Stephanie A., Tringe, Susannah G., Currie, Cameron R., Kolter, Roberto
Publicado 2017

Genome Sequences of Two Klebsiella pneumoniae Isolates from Different Geographical Regions, Argentina (Strain JHCK1) and the United States (Strain VA360)

por Xie, Gary, Ramirez, Maria S., Marshall, Steven H., Hujer, Kristine M., Lo, Chien-Chi, Johnson, Shannon, Li, Po-E, Davenport, Karen, Endimiani, Andrea, Bonomo, Robert A., Tolmasky, Marcelo E., Chain, Patrick S. G.
Publicado 2013