Genomics and epidemiological surveillance

por Lo, Stephanie W., Jamrozy, Dorota
Publicado 2020

Author Correction: Genomics and epidemiological surveillance

por Lo, Stephanie W., Jamrozy, Dorota
Publicado 2020

Global genomic pathogen surveillance to inform vaccine strategies: a decade-long expedition in pneumococcal genomics

por Bentley, Stephen D., Lo, Stephanie W.
Publicado 2021

Comparative genomic epidemiology of serotype 3 IPD and carriage isolates from Southampton, UK between 2005 and 2017

por Cleary, David W., Lo, Stephanie W., Kumar, Narender, Bentley, Stephen D., Faust, Saul N., Clarke, Stuart C.
Publicado 2023

Characterization of Pneumococcal Colonization Dynamics and Antimicrobial Resistance Using Shotgun Metagenomic Sequencing in Intensively Sampled South African Infants

por Manenzhe, Rendani I., Dube, Felix S., Wright, Meredith, Lennard, Katie, Mounaud, Stephanie, Lo, Stephanie W., Zar, Heather J., Nierman, William C., Nicol, Mark P., Moodley, Clinton
Publicado 2020

Genetic background of Cambodian pneumococcal carriage isolates following pneumococcal conjugate vaccine 13

por Belman, Sophie, Soeng, Sona, Soputhy, Chansovannara, Gladstone, Rebecca, Hawkins, Paulina A., Breiman, Robert F., McGee, Lesley, Bentley, Stephen D., Lo, Stephanie W., Turner, Paul
Publicado 2022

Fast and flexible bacterial genomic epidemiology with PopPUNK

por Lees, John A., Harris, Simon R., Tonkin-Hill, Gerry, Gladstone, Rebecca A., Lo, Stephanie W., Weiser, Jeffrey N., Corander, Jukka, Bentley, Stephen D., Croucher, Nicholas J.
Publicado 2019

Novel pneumococcal capsule type 33E results from the inactivation of glycosyltransferase WciE in vaccine type 33F

por Ganaie, Feroze A., Saad, Jamil S., Lo, Stephanie W., McGee, Lesley, van Tonder, Andries J., Hawkins, Paulina A., Calix, Juan J., Bentley, Stephen D., Nahm, Moon H.
Publicado 2023

Population genetic structure, serotype distribution and antibiotic resistance of Streptococcus pneumoniae causing invasive disease in children in Argentina

por Gagetti, Paula, Lo, Stephanie W., Hawkins, Paulina A., Gladstone, Rebecca A., Regueira, Mabel, Faccone, Diego, Klugman, Keith P., Breiman, Robert F., McGee, Lesley, Bentley, Stephen D., Corso, Alejandra
Publicado 2021

A New Pneumococcal Capsule Type, 10D, is the 100th Serotype and Has a Large cps Fragment from an Oral Streptococcus

por Ganaie, Feroze, Saad, Jamil S., McGee, Lesley, van Tonder, Andries J., Bentley, Stephen D., Lo, Stephanie W., Gladstone, Rebecca A., Turner, Paul, Keenan, Jeremy D., Breiman, Robert F., Nahm, Moon H.
Publicado 2020

Streptococcus pneumoniae genomic datasets from an Indian population describing pre-vaccine evolutionary epidemiology using a whole genome sequencing approach

por Nagaraj, Geetha, Govindan, Vandana, Ganaie, Feroze, Venkatesha, V. T., Hawkins, Paulina A., Gladstone, Rebecca A., McGee, Lesley, Breiman, Robert F., Bentley, Stephen D., Klugman, Keith P., Lo, Stephanie W., Ravikumar, K. L.
Publicado 2021

Genomic surveillance of invasive Streptococcus pneumoniae isolates in the period pre-PCV10 and post-PCV10 introduction in Brazil

por Almeida, Samanta C. G., Lo, Stephanie W., Hawkins, Paulina A., Gladstone, Rebecca A., Cassiolato, Ana Paula, Klugman, Keith P., Breiman, Robert F., Bentley, Stephen D., McGee, Lesley, Brandileone, Maria-Cristina de C.
Publicado 2021

A global genomic perspective on the multidrug-resistant Streptococcus pneumoniae 15A-CC63 sub-lineage following pneumococcal conjugate vaccine introduction

por Hawkins, Paulina A., Chochua, Sopio, Lo, Stephanie W., Belman, Sophie, Antonio, Martin, Kwambana-Adams, Brenda, von Gottberg, Anne, du Plessis, Mignon, Cornick, Jen, Beall, Bernard, Breiman, Robert F., Bentley, Stephen D., McGee, Lesley
Publicado 2023

Endocarditis Caused by Nontypeable Streptococcus pneumoniae( )

por Henriet, Stefanie S V, Langereis, Jeroen D, Lo, Stephanie W, Bentley, Stephen, Mesman, Rob J, Fejzic, Zina, van Niftrik, Laura, van Sorge, Nina M, Wertheim, Heiman F L, de Jonge, Marien I, Cremers, Amelieke J H
Publicado 2022

Key features of pneumococcal isolates recovered in Central and Northwestern Russia in 2011–2018 determined through whole-genome sequencing

por Egorova, Ekaterina, Kumar, Narender, Gladstone, Rebecca A., Urban, Yulia, Voropaeva, Elena, Chaplin, A.V., Rumiantseva, Elena, Svistunova, T. S., Hawkins, Paulina A., Klugman, Keith P., Breiman, Robert F., McGee, Lesley, Bentley, Stephen D., Lo, Stephanie W.
Publicado 2022

Molecular characterization of Streptococcus pneumoniae causing disease among children in Nigeria during the introduction of PCV10 (GSK)

por Lo, Stephanie W., Hawkins, Paulina A., Jibir, Binta, Hassan-Hanga, Fatimah, Gambo, Mahmoud, Olaosebikan, Rasaq, Olanipekun, Grace, Munir, Huda, Kocmich, Nicholas, Rezac-Elgohary, Amy, Gambo, Safiya, Bagenda, Danstan, Fey, Paul, Breiman, Robert F., McGee, Lesley, Bentley, Stephen D., Obaro, Stephen K.
Publicado 2023

Variants of Streptococcus pneumoniae Serotype 14 from Papua New Guinea with the Potential to Be Mistyped and Escape Vaccine-Induced Protection

por Manna, Sam, Spry, Leena, Wee-Hee, Ashleigh, Ortika, Belinda D., Boelsen, Laura K., Batinovic, Steven, Mazarakis, Nadia, Ford, Rebecca L., Lo, Stephanie W., Bentley, Stephen D., Russell, Fiona M., Blyth, Christopher C., Pomat, William S., Petrovski, Steve, Hinds, Jason, Licciardi, Paul V., Satzke, Catherine
Publicado 2022

The role of interspecies recombination in the evolution of antibiotic-resistant pneumococci

por D'Aeth, Joshua C, van der Linden, Mark PG, McGee, Lesley, de Lencastre, Herminia, Turner, Paul, Song, Jae-Hoon, Lo, Stephanie W, Gladstone, Rebecca A, Sá-Leão, Raquel, Ko, Kwan Soo, Hanage, William P, Breiman, Robert F, Beall, Bernard, Bentley, Stephen D, Croucher, Nicholas J
Publicado 2021

Putative novel cps loci in a large global collection of pneumococci

por van Tonder, Andries J., Gladstone, Rebecca A., Lo, Stephanie W., Nahm, Moon H., du Plessis, Mignon, Cornick, Jennifer, Kwambana-Adams, Brenda, Madhi, Shabir A., Hawkins, Paulina A., Benisty, Rachel, Dagan, Ron, Everett, Dean, Antonio, Martin, Klugman, Keith P., von Gottberg, Anne, Breiman, Robert F., McGee, Lesley, Bentley, Stephen D.
Publicado 2019

Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation

por Chaguza, Chrispin, Senghore, Madikay, Bojang, Ebrima, Gladstone, Rebecca A., Lo, Stephanie W., Tientcheu, Peggy-Estelle, Bancroft, Rowan E., Worwui, Archibald, Foster-Nyarko, Ebenezer, Ceesay, Fatima, Okoi, Catherine, McGee, Lesley, Klugman, Keith P., Breiman, Robert F., Barer, Michael R., Adegbola, Richard A., Antonio, Martin, Bentley, Stephen D., Kwambana-Adams, Brenda A.
Publicado 2020