Machine Learning Approaches Identify Genes Containing Spatial Information From Single-Cell Transcriptomics Data

por Loher, Phillipe, Karathanasis, Nestoras
Publicado 2021

IsomiR expression profiles in human lymphoblastoid cell lines exhibit population and gender dependencies

por Loher, Phillipe, Londin, Eric R., Rigoutsos, Isidore
Publicado 2014

MINTmap: fast and exhaustive profiling of nuclear and mitochondrial tRNA fragments from short RNA-seq data

por Loher, Phillipe, Telonis, Aristeidis G., Rigoutsos, Isidore
Publicado 2017

Threshold-seq: a tool for determining the threshold in short RNA-seq datasets

por Magee, Rogan, Loher, Phillipe, Londin, Eric, Rigoutsos, Isidore
Publicado 2017

Nuclear and mitochondrial tRNA-lookalikes in the human genome

por Telonis, Aristeidis G., Loher, Phillipe, Kirino, Yohei, Rigoutsos, Isidore
Publicado 2014

Consequential considerations when mapping tRNA fragments

por Telonis, Aristeidis G., Loher, Phillipe, Kirino, Yohei, Rigoutsos, Isidore
Publicado 2016

MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments

por Pliatsika, Venetia, Loher, Phillipe, Telonis, Aristeidis G., Rigoutsos, Isidore
Publicado 2016

Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity

por Telonis, Aristeidis G., Loher, Phillipe, Jing, Yi, Londin, Eric, Rigoutsos, Isidore
Publicado 2015

The biogenesis pathway of tRNA-derived piRNAs in Bombyx germ cells

por Honda, Shozo, Kawamura, Takuya, Loher, Phillipe, Morichika, Keisuke, Rigoutsos, Isidore, Kirino, Yohei
Publicado 2017

Profiles of miRNA Isoforms and tRNA Fragments in Prostate Cancer

por Magee, Rogan G., Telonis, Aristeidis G., Loher, Phillipe, Londin, Eric, Rigoutsos, Isidore
Publicado 2018

Ribosomal RNA fragmentation into short RNAs (rRFs) is modulated in a sex- and population of origin-specific manner

por Cherlin, Tess, Magee, Rogan, Jing, Yi, Pliatsika, Venetia, Loher, Phillipe, Rigoutsos, Isidore
Publicado 2020

Knowledge about the presence or absence of miRNA isoforms (isomiRs) can successfully discriminate amongst 32 TCGA cancer types

por Telonis, Aristeidis G., Magee, Rogan, Loher, Phillipe, Chervoneva, Inna, Londin, Eric, Rigoutsos, Isidore
Publicado 2017

YAMAT-seq: an efficient method for high-throughput sequencing of mature transfer RNAs

por Shigematsu, Megumi, Honda, Shozo, Loher, Phillipe, Telonis, Aristeidis G., Rigoutsos, Isidore, Kirino, Yohei
Publicado 2017

The Typical tRNA Co-Expresses Multiple 5′ tRNA Halves Whose Sequences and Abundances Depend on Isodecoder and Isoacceptor and Change with Tissue Type, Cell Type, and Disease

por Akins, Robert Brian, Ostberg, Kayleigh, Cherlin, Tess, Tsiouplis, Nikolas J., Loher, Phillipe, Rigoutsos, Isidore
Publicado 2023

Argonaute CLIP-Seq reveals miRNA targetome diversity across tissue types

por Clark, Peter M., Loher, Phillipe, Quann, Kevin, Brody, Jonathan, Londin, Eric R., Rigoutsos, Isidore
Publicado 2014

Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies

por Telonis, Aristeidis G., Loher, Phillipe, Honda, Shozo, Jing, Yi, Palazzo, Juan, Kirino, Yohei, Rigoutsos, Isidore
Publicado 2015

Using medicare claims to estimate risk-adjusted performance of Pennsylvania trauma centers

por Zebrowski, Alexis M., Loher, Phillipe, Buckler, David G., Rigoutsos, Isidore, Carr, Brendan G., Wiebe, Douglas J.
Publicado 2023

Increasing cell density globally enhances the biogenesis of Piwi-interacting RNAs in Bombyx mori germ cells

por Honda, Shozo, Loher, Phillipe, Morichika, Keisuke, Shigematsu, Megumi, Kawamura, Takuya, Kirino, Yoriko, Rigoutsos, Isidore, Kirino, Yohei
Publicado 2017

IsoMiRmap: fast, deterministic and exhaustive mining of isomiRs from short RNA-seq datasets

por Loher, Phillipe, Karathanasis, Nestoras, Londin, Eric, F. Bray, Paul, Pliatsika, Venetia, Telonis, Aristeidis G., Rigoutsos, Isidore
Publicado 2021

Molecular dynamics simulations of Ago silencing complexes reveal a large repertoire of admissible ‘seed-less’ targets

por Xia, Zhen, Clark, Peter, Huynh, Tien, Loher, Phillipe, Zhao, Yue, Chen, Huang-Wen, Rigoutsos, Isidore, Zhou, Ruhong
Publicado 2012