Tracking intratumoral heterogeneity in glioblastoma via regularized classification of single-cell RNA-Seq data

por Lopes, Marta B., Vinga, Susana
Publicado 2020

Disclosing transcriptomics network-based signatures of glioma heterogeneity using sparse methods

por Martins, Sofia, Coletti, Roberta, Lopes, Marta B.
Publicado 2023

Twiner: correlation-based regularization for identifying common cancer gene signatures

por Lopes, Marta B., Casimiro, Sandra, Vinga, Susana
Publicado 2019

Identification of influential observations in high-dimensional cancer survival data through the rank product test

por Carrasquinha, Eunice, Veríssimo, André, Lopes, Marta B., Vinga, Susana
Publicado 2018

ROSIE: RObust Sparse ensemble for outlIEr detection and gene selection in cancer omics data

por Jensch, Antje, Lopes, Marta B., Vinga, Susana, Radde, Nicole
Publicado 2022

TCox: Correlation-Based Regularization Applied to Colorectal Cancer Survival Data

por Peixoto, Carolina, Lopes, Marta B., Martins, Marta, Costa, Luís, Vinga, Susana
Publicado 2020

The Role of Network Science in Glioblastoma

por Lopes, Marta B., Martins, Eduarda P., Vinga, Susana, Costa, Bruno M.
Publicado 2021

Robust identification of target genes and outliers in triple-negative breast cancer data

por Segaert, Pieter, Lopes, Marta B, Casimiro, Sandra, Vinga, Susana, Rousseeuw, Peter J
Publicado 2018

Ensemble outlier detection and gene selection in triple-negative breast cancer data

por Lopes, Marta B., Veríssimo, André, Carrasquinha, Eunice, Casimiro, Sandra, Beerenwinkel, Niko, Vinga, Susana
Publicado 2018

Time-Lagged Correlation Analysis of Shellfish Toxicity Reveals Predictive Links to Adjacent Areas, Species, and Environmental Conditions

por Patrício, André, Lopes, Marta B., Costa, Pedro Reis, Costa, Rafael S., Henriques, Rui, Vinga, Susana
Publicado 2022

Overview of data preprocessing for machine learning applications in human microbiome research

por Ibrahimi, Eliana, Lopes, Marta B., Dhamo, Xhilda, Simeon, Andrea, Shigdel, Rajesh, Hron, Karel, Stres, Blaž, D’Elia, Domenica, Berland, Magali, Marcos-Zambrano, Laura Judith
Publicado 2023

Machine learning approaches in microbiome research: challenges and best practices

por Papoutsoglou, Georgios, Tarazona, Sonia, Lopes, Marta B., Klammsteiner, Thomas, Ibrahimi, Eliana, Eckenberger, Julia, Novielli, Pierfrancesco, Tonda, Alberto, Simeon, Andrea, Shigdel, Rajesh, Béreux, Stéphane, Vitali, Giacomo, Tangaro, Sabina, Lahti, Leo, Temko, Andriy, Claesson, Marcus J., Berland, Magali
Publicado 2023

Identification of biomarkers predictive of metastasis development in early-stage colorectal cancer using network-based regularization

por Peixoto, Carolina, Lopes, Marta B., Martins, Marta, Casimiro, Sandra, Sobral, Daniel, Grosso, Ana Rita, Abreu, Catarina, Macedo, Daniela, Costa, Ana Lúcia, Pais, Helena, Alvim, Cecília, Mansinho, André, Filipe, Pedro, Costa, Pedro Marques da, Fernandes, Afonso, Borralho, Paula, Ferreira, Cristina, Malaquias, João, Quintela, António, Kaplan, Shannon, Golkaram, Mahdi, Salmans, Michael, Khan, Nafeesa, Vijayaraghavan, Raakhee, Zhang, Shile, Pawlowski, Traci, Godsey, Jim, So, Alex, Liu, Li, Costa, Luís, Vinga, Susana
Publicado 2023

Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment

por Marcos-Zambrano, Laura Judith, Karaduzovic-Hadziabdic, Kanita, Loncar Turukalo, Tatjana, Przymus, Piotr, Trajkovik, Vladimir, Aasmets, Oliver, Berland, Magali, Gruca, Aleksandra, Hasic, Jasminka, Hron, Karel, Klammsteiner, Thomas, Kolev, Mikhail, Lahti, Leo, Lopes, Marta B., Moreno, Victor, Naskinova, Irina, Org, Elin, Paciência, Inês, Papoutsoglou, Georgios, Shigdel, Rajesh, Stres, Blaz, Vilne, Baiba, Yousef, Malik, Zdravevski, Eftim, Tsamardinos, Ioannis, Carrillo de Santa Pau, Enrique, Claesson, Marcus J., Moreno-Indias, Isabel, Truu, Jaak
Publicado 2021

Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions

por Moreno-Indias, Isabel, Lahti, Leo, Nedyalkova, Miroslava, Elbere, Ilze, Roshchupkin, Gennady, Adilovic, Muhamed, Aydemir, Onder, Bakir-Gungor, Burcu, Santa Pau, Enrique Carrillo-de, D’Elia, Domenica, Desai, Mahesh S., Falquet, Laurent, Gundogdu, Aycan, Hron, Karel, Klammsteiner, Thomas, Lopes, Marta B., Marcos-Zambrano, Laura Judith, Marques, Cláudia, Mason, Michael, May, Patrick, Pašić, Lejla, Pio, Gianvito, Pongor, Sándor, Promponas, Vasilis J., Przymus, Piotr, Saez-Rodriguez, Julio, Sampri, Alexia, Shigdel, Rajesh, Stres, Blaz, Suharoschi, Ramona, Truu, Jaak, Truică, Ciprian-Octavian, Vilne, Baiba, Vlachakis, Dimitrios, Yilmaz, Ercument, Zeller, Georg, Zomer, Aldert L., Gómez-Cabrero, David, Claesson, Marcus J.
Publicado 2021

Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action

por D’Elia, Domenica, Truu, Jaak, Lahti, Leo, Berland, Magali, Papoutsoglou, Georgios, Ceci, Michelangelo, Zomer, Aldert, Lopes, Marta B., Ibrahimi, Eliana, Gruca, Aleksandra, Nechyporenko, Alina, Frohme, Marcus, Klammsteiner, Thomas, Pau, Enrique Carrillo-de Santa, Marcos-Zambrano, Laura Judith, Hron, Karel, Pio, Gianvito, Simeon, Andrea, Suharoschi, Ramona, Moreno-Indias, Isabel, Temko, Andriy, Nedyalkova, Miroslava, Apostol, Elena-Simona, Truică, Ciprian-Octavian, Shigdel, Rajesh, Telalović, Jasminka Hasić, Bongcam-Rudloff, Erik, Przymus, Piotr, Jordamović, Naida Babić, Falquet, Laurent, Tarazona, Sonia, Sampri, Alexia, Isola, Gaetano, Pérez-Serrano, David, Trajkovik, Vladimir, Klucar, Lubos, Loncar-Turukalo, Tatjana, Havulinna, Aki S., Jansen, Christian, Bertelsen, Randi J., Claesson, Marcus Joakim
Publicado 2023