Consistency Analysis of Redundant Probe Sets on Affymetrix Three-Prime Expression Arrays and Applications to Differential mRNA Processing

por Cui, Xiangqin, Loraine, Ann E.
Publicado 2009

Visualizing the genome: techniques for presenting human genome data and annotations

por Loraine, Ann E, Helt, Gregg A
Publicado 2002

Prevalence of alternative splicing choices in Arabidopsis thaliana

por English, Adam C, Patel, Ketan S, Loraine, Ann E
Publicado 2010

Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems

por Liu, Ruolin, Loraine, Ann E, Dickerson, Julie A
Publicado 2014

Cell-specific cis-natural antisense transcripts (cis-NATs) in the sperm and the pollen vegetative cells of Arabidopsis thaliana

por Qin, Peng, Loraine, Ann E., McCormick, Sheila
Publicado 2018

Integrated genome browser: visual analytics platform for genomics

por Freese, Nowlan H., Norris, David C., Loraine, Ann E.
Publicado 2016

Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR

por Estrada, April D., Freese, Nowlan H., Blakley, Ivory C., Loraine, Ann E.
Publicado 2015

Genomic targets of HOP2 are enriched for features found at recombination hotspots

por Daradur, Jenya, Kesserwan, Mohamad, Freese, Nowlan H., Loraine, Ann E., Riggs, C. Daniel
Publicado 2023

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

por Nicol, John W., Helt, Gregg A., Blanchard, Steven G., Raja, Archana, Loraine, Ann E.
Publicado 2009

ProtAnnot: an App for Integrated Genome Browser to display how alternative splicing and transcription affect proteins

por Mall, Tarun, Eckstein, John, Norris, David, Vora, Hiral, Freese, Nowlan H., Loraine, Ann E.
Publicado 2016

Many rice genes are differentially spliced between roots and shoots but cytokinin has minimal effect on splicing

por Freese, Nowlan H., Estrada, April R., Blakley, Ivory C., Duan, Jinjie, Loraine, Ann E.
Publicado 2019

The Arabidopsis transcription factor AINTEGUMENTA orchestrates patterning genes and auxin signaling in the establishment of floral growth and form

por Krizek, Beth A., Blakley, Ivory C., Ho, Yen‐Yi, Freese, Nowlan, Loraine, Ann E.
Publicado 2020

Commonality of functional annotation: a method for prioritization of candidate genes from genome-wide linkage studies(†)

por Shriner, Daniel, Baye, Tesfaye M., Padilla, Miguel A., Zhang, Shiju, Vaughan, Laura K., Loraine, Ann E.
Publicado 2008

AINTEGUMENTA and AINTEGUMENTA-LIKE6 directly regulate floral homeotic, growth, and vascular development genes in young Arabidopsis flowers

por Krizek, Beth A, Bantle, Alexis T, Heflin, Jorman M, Han, Han, Freese, Nowlan H, Loraine, Ann E
Publicado 2021

BioViz Connect: Web Application Linking CyVerse Cloud Resources to Genomic Visualization in the Integrated Genome Browser

por Raveendran, Karthik, Freese, Nowlan H., Kintali, Chaitanya, Tiwari, Srishti, Bole, Pawan, Dias, Chester, Loraine, Ann E.
Publicado 2022

Genoviz Software Development Kit: Java tool kit for building genomics visualization applications

por Helt, Gregg A, Nicol, John W, Erwin, Ed, Blossom, Eric, Blanchard, Steven G, Chervitz, Stephen A, Harmon, Cyrus, Loraine, Ann E
Publicado 2009

A Comparison of transgenic and wild type soybean seeds: analysis of transcriptome profiles using RNA-Seq

por Lambirth, Kevin C., Whaley, Adam M., Blakley, Ivory C., Schlueter, Jessica A., Bost, Kenneth L., Loraine, Ann E., Piller, Kenneth J.
Publicado 2015

RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific...

por Gupta, Vikas, Estrada, April D, Blakley, Ivory, Reid, Rob, Patel, Ketan, Meyer, Mason D, Andersen, Stig Uggerhøj, Brown, Allan F, Lila, Mary Ann, Loraine, Ann E
Publicado 2015

Characterization of the cytokinin-responsive transcriptome in rice

por Raines, Tracy, Blakley, Ivory C., Tsai, Yu-Chang, Worthen, Jennifer M., Franco-Zorrilla, José Manuel, Solano, Roberto, Schaller, G. Eric, Loraine, Ann E., Kieber, Joseph J.
Publicado 2016

Integrated Genome Browser App Store

por Shanbhag, Sameer, Patil, Riddhi, Zahara, Noor, Shetty, Chirag, Weidenhammer, Rachel, Watharkar, Sneha, Tambvekar, Pranav, Badzuh, Philip P, Dias, Chester, Vankayala, Narendra, Kulkarni, Prutha, Vallapureddy, Charan, Kulkarni, Shamika, Nikhare, Pooja, Freese, Nowlan H, Loraine, Ann E
Publicado 2022