Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition

por Lou, Yue Clare, Olm, Matthew R., Diamond, Spencer, Crits-Christoph, Alexander, Firek, Brian A., Baker, Robyn, Morowitz, Michael J., Banfield, Jillian F.
Publicado 2021

Using strain-resolved analysis to identify contamination in metagenomics data

por Lou, Yue Clare, Hoff, Jordan, Olm, Matthew R., West-Roberts, Jacob, Diamond, Spencer, Firek, Brian A., Morowitz, Michael J., Banfield, Jillian F.
Publicado 2023

Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2’-fucosyllactose utilization can be facilitated by coexisting species

por Lou, Yue Clare, Rubin, Benjamin E., Schoelmerich, Marie C., DiMarco, Kaden S., Borges, Adair L., Rovinsky, Rachel, Song, Leo, Doudna, Jennifer A., Banfield, Jillian F.
Publicado 2023

Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes

por Borges, Adair L., Lou, Yue Clare, Sachdeva, Rohan, Al-Shayeb, Basem, Penev, Petar I., Jaffe, Alexander L., Lei, Shufei, Santini, Joanne M., Banfield, Jillian F.
Publicado 2022

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

por West, Patrick T., Peters, Samantha L., Olm, Matthew R., Yu, Feiqiao B., Gause, Haley, Lou, Yue Clare, Firek, Brian A., Baker, Robyn, Johnson, Alexander D., Morowitz, Michael J., Hettich, Robert L., Banfield, Jillian F.
Publicado 2021

Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants

por Crits-Christoph, Alexander, Kantor, Rose S., Olm, Matthew R., Whitney, Oscar N., Al-Shayeb, Basem, Lou, Yue Clare, Flamholz, Avi, Kennedy, Lauren C., Greenwald, Hannah, Hinkle, Adrian, Hetzel, Jonathan, Spitzer, Sara, Koble, Jeffery, Tan, Asako, Hyde, Fred, Schroth, Gary, Kuersten, Scott, Banfield, Jillian F., Nelson, Kara L.
Publicado 2021