The Arrival of the Frequent: How Bias in Genotype-Phenotype Maps Can Steer Populations to Local Optima

por Schaper, Steffen, Louis, Ard A.
Publicado 2014

Effect of Bending Rigidity on the Knotting of a Polymer under Tension

por Matthews, Richard, Louis, Ard A., Likos, Christos N.
Publicado 2012

Input–output maps are strongly biased towards simple outputs

por Dingle, Kamaludin, Camargo, Chico Q., Louis, Ard A.
Publicado 2018

Generic predictions of output probability based on complexities of inputs and outputs

por Dingle, Kamaludin, Pérez, Guillermo Valle, Louis, Ard A.
Publicado 2020

Phenotype Bias Determines How Natural RNA Structures Occupy the Morphospace of All Possible Shapes

por Dingle, Kamaludin, Ghaddar, Fatme, Šulc, Petr, Louis, Ard A
Publicado 2021

Genetic Correlations Greatly Increase Mutational Robustness and Can Both Reduce and Enhance Evolvability

por Greenbury, Sam F., Schaper, Steffen, Ahnert, Sebastian E., Louis, Ard A.
Publicado 2016

The interplay of supercoiling and thymine dimers in DNA

por Lim, Wilber, Randisi, Ferdinando, Doye, Jonathan P K, Louis, Ard A
Publicado 2022

Predicting phenotype transition probabilities via conditional algorithmic probability approximations

por Dingle, Kamaludin, Novev, Javor K., Ahnert, Sebastian E., Louis, Ard A.
Publicado 2022

A tractable genotype–phenotype map modelling the self-assembly of protein quaternary structure

por Greenbury, Sam F., Johnston, Iain G., Louis, Ard A., Ahnert, Sebastian E.
Publicado 2014

Plectoneme tip bubbles: Coupled denaturation and writhing in supercoiled DNA

por Matek, Christian, Ouldridge, Thomas E., Doye, Jonathan P. K., Louis, Ard A.
Publicado 2015

DNA hybridization kinetics: zippering, internal displacement and sequence dependence

por Ouldridge, Thomas E., Šulc, Petr, Romano, Flavio, Doye, Jonathan P. K., Louis, Ard A.
Publicado 2013

Coarse-grained modelling of the structural properties of DNA origami

por Snodin, Benedict E K, Schreck, John S, Romano, Flavio, Louis, Ard A, Doye, Jonathan P K
Publicado 2019

Identifying Physical Causes of Apparent Enhanced Cyclization of Short DNA Molecules with a Coarse-Grained Model

por Harrison, Ryan M., Romano, Flavio, Ouldridge, Thomas E., Louis, Ard A., Doye, Jonathan P. K.
Publicado 2019

Maximum mutational robustness in genotype–phenotype maps follows a self-similar blancmange-like curve

por Mohanty, Vaibhav, Greenbury, Sam F., Sarkany, Tasmin, Narayanan, Shyam, Dingle, Kamaludin, Ahnert, Sebastian E., Louis, Ard A.
Publicado 2023

DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization

por Schreck, John S., Ouldridge, Thomas E., Romano, Flavio, Šulc, Petr, Shaw, Liam P., Louis, Ard A., Doye, Jonathan P.K.
Publicado 2015

Design of hidden thermodynamic driving for non-equilibrium systems via mismatch elimination during DNA strand displacement

por Haley, Natalie E. C., Ouldridge, Thomas E., Mullor Ruiz, Ismael, Geraldini, Alessandro, Louis, Ard A., Bath, Jonathan, Turberfield, Andrew J.
Publicado 2020

On the biophysics and kinetics of toehold-mediated DNA strand displacement

por Srinivas, Niranjan, Ouldridge, Thomas E., Šulc, Petr, Schaeffer, Joseph M., Yurke, Bernard, Louis, Ard A., Doye, Jonathan P. K., Winfree, Erik
Publicado 2013

Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution

por Johnston, Iain G., Dingle, Kamaludin, Greenbury, Sam F., Camargo, Chico Q., Doye, Jonathan P. K., Ahnert, Sebastian E., Louis, Ard A.
Publicado 2022

Reply to Ocklenburg and Mundorf: The interplay of developmental bias and natural selection

por Johnston, Iain G., Dingle, Kamaludin, Greenbury, Sam F., Camargo, Chico Q., Doye, Jonathan P. K., Ahnert, Sebastian E., Louis, Ard A.
Publicado 2022

Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation

por Sutthibutpong, Thana, Matek, Christian, Benham, Craig, Slade, Gabriel G., Noy, Agnes, Laughton, Charles, K. Doye, Jonathan P., Louis, Ard A., Harris, Sarah A.
Publicado 2016