Comprehensive Large-Scale Integrative Analysis of Omics Data To Accelerate Specialized Metabolite Discovery

por Louwen, Joris J. R., van der Hooft, Justin J. J.
Publicado 2021

Enhanced correlation-based linking of biosynthetic gene clusters to their metabolic products through chemical class matching

por Louwen, Joris J. R., Medema, Marnix H., van der Hooft, Justin J. J.
Publicado 2023

iPRESTO: Automated discovery of biosynthetic sub-clusters linked to specific natural product substructures

por Louwen, Joris J. R., Kautsar, Satria A., van der Burg, Sven, Medema, Marnix H., van der Hooft, Justin J. J.
Publicado 2023

Good practices and recommendations for using and benchmarking computational metabolomics metabolite annotation tools

por de Jonge, Niek F., Mildau, Kevin, Meijer, David, Louwen, Joris J. R., Bueschl, Christoph, Huber, Florian, van der Hooft, Justin J. J.
Publicado 2022

MS2Query: reliable and scalable MS(2) mass spectra-based analogue search

por de Jonge, Niek F., Louwen, Joris J. R., Chekmeneva, Elena, Camuzeaux, Stephane, Vermeir, Femke J., Jansen, Robert S., Huber, Florian, van der Hooft, Justin J. J.
Publicado 2023

NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters

por Leão, Tiago F, Wang, Mingxun, da Silva, Ricardo, Gurevich, Alexey, Bauermeister, Anelize, Gomes, Paulo Wender P, Brejnrod, Asker, Glukhov, Evgenia, Aron, Allegra T, Louwen, Joris J R, Kim, Hyun Woo, Reher, Raphael, Fiore, Marli F, van der Hooft, Justin J J, Gerwick, Lena, Gerwick, William H, Bandeira, Nuno, Dorrestein, Pieter C
Publicado 2022

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

por Terlouw, Barbara R, Blin, Kai, Navarro-Muñoz, Jorge C, Avalon, Nicole E, Chevrette, Marc G, Egbert, Susan, Lee, Sanghoon, Meijer, David, Recchia, Michael J J, Reitz, Zachary L, van Santen, Jeffrey A, Selem-Mojica, Nelly, Tørring, Thomas, Zaroubi, Liana, Alanjary, Mohammad, Aleti, Gajender, Aguilar, César, Al-Salihi, Suhad A A, Augustijn, Hannah E, Avelar-Rivas, J Abraham, Avitia-Domínguez, Luis A, Barona-Gómez, Francisco, Bernaldo-Agüero, Jordan, Bielinski, Vincent A, Biermann, Friederike, Booth, Thomas J, Carrion Bravo, Victor J, Castelo-Branco, Raquel, Chagas, Fernanda O, Cruz-Morales, Pablo, Du, Chao, Duncan, Katherine R, Gavriilidou, Athina, Gayrard, Damien, Gutiérrez-García, Karina, Haslinger, Kristina, Helfrich, Eric J N, van der Hooft, Justin J J, Jati, Afif P, Kalkreuter, Edward, Kalyvas, Nikolaos, Kang, Kyo Bin, Kautsar, Satria, Kim, Wonyong, Kunjapur, Aditya M, Li, Yong-Xin, Lin, Geng-Min, Loureiro, Catarina, Louwen, Joris J R, Louwen, Nico L L, Lund, George, Parra, Jonathan, Philmus, Benjamin, Pourmohsenin, Bita, Pronk, Lotte J U, Rego, Adriana, Rex, Devasahayam Arokia Balaya, Robinson, Serina, Rosas-Becerra, L Rodrigo, Roxborough, Eve T, Schorn, Michelle A, Scobie, Darren J, Singh, Kumar Saurabh, Sokolova, Nika, Tang, Xiaoyu, Udwary, Daniel, Vigneshwari, Aruna, Vind, Kristiina, Vromans, Sophie P J M, Waschulin, Valentin, Williams, Sam E, Winter, Jaclyn M, Witte, Thomas E, Xie, Huali, Yang, Dong, Yu, Jingwei, Zdouc, Mitja, Zhong, Zheng, Collemare, Jérôme, Linington, Roger G, Weber, Tilmann, Medema, Marnix H
Publicado 2022