GtRNAdb: a database of transfer RNA genes detected in genomic sequence

por Chan, Patricia P., Lowe, Todd M.
Publicado 2009

GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes

por Chan, Patricia P., Lowe, Todd M.
Publicado 2016

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

por Lowe, Todd M., Chan, Patricia P.
Publicado 2016

The modern “3G” age of archaeal molecular biology

por Robb, Frank T., Lowe, Todd M., Kelman, Zvi
Publicado 2012

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

por Schattner, Peter, Brooks, Angela N., Lowe, Todd M.
Publicado 2005

Discovery of permuted and recently split transfer RNAs in Archaea

por Chan, Patricia P, Cozen, Aaron E, Lowe, Todd M
Publicado 2011

Modeling the Thermoproteaceae RNase P RNA

por Chan, Patricia P., Brown, James W., Lowe, Todd M.
Publicado 2012

tRNAviz: explore and visualize tRNA sequence features

por Lin, Brian Y, Chan, Patricia P, Lowe, Todd M
Publicado 2019

Systematic identification of tRNA genes in Drosophila melanogaster

por Marygold, Steven J, Chan, Patricia P, Lowe, Todd M
Publicado 2022

Eukaryotic tRNA sequences present conserved and amino acid-specific structural signatures

por Westhof, Eric, Thornlow, Bryan, Chan, Patricia P, Lowe, Todd M
Publicado 2022

The UCSC Archaeal Genome Browser

por Schneider, Kevin L., Pollard, Katherine S., Baertsch, Robert, Pohl, Andy, Lowe, Todd M.
Publicado 2006

Diversity of Antisense and Other Non-Coding RNAs in Archaea Revealed by Comparative Small RNA Sequencing in Four Pyrobaculum Species

por Bernick, David L., Dennis, Patrick P., Lui, Lauren M., Lowe, Todd M.
Publicado 2012

Comparative genomic and transcriptional analyses of CRISPR systems across the genus Pyrobaculum

por Bernick, David L., Cox, Courtney L., Dennis, Patrick P., Lowe, Todd M.
Publicado 2012

tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes

por Chan, Patricia P, Lin, Brian Y, Mak, Allysia J, Lowe, Todd M
Publicado 2021

Draft De Novo Transcriptome of the Rat Kangaroo Potorous tridactylus as a Tool for Cell Biology

por Udy, Dylan B., Voorhies, Mark, Chan, Patricia P., Lowe, Todd M., Dumont, Sophie
Publicado 2015

The UCSC Archaeal Genome Browser: 2012 update

por Chan, Patricia P., Holmes, Andrew D., Smith, Andrew M., Tran, Danny, Lowe, Todd M.
Publicado 2012

ARM-Seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments

por Cozen, Aaron E., Quartley, Erin, Holmes, Andrew D., Robinson, Eva H., Phizicky, Eric M., Lowe, Todd M.
Publicado 2015

Methylation guide RNA evolution in archaea: structure, function and genomic organization of 110 C/D box sRNA families across six Pyrobaculum species

por Lui, Lauren M, Uzilov, Andrew V, Bernick, David L, Corredor, Andrea, Lowe, Todd M, Dennis, Patrick P
Publicado 2018

Transfer RNA genes experience exceptionally elevated mutation rates

por Thornlow, Bryan P., Hough, Josh, Roger, Jacquelyn M., Gong, Henry, Lowe, Todd M., Corbett-Detig, Russell B.
Publicado 2018

Predicting transfer RNA gene activity from sequence and genome context

por Thornlow, Bryan P., Armstrong, Joel, Holmes, Andrew D., Howard, Jonathan M., Corbett-Detig, Russell B., Lowe, Todd M.
Publicado 2020