CSAR-web: a web server of contig scaffolding using algebraic rearrangements

por Chen, Kun-Tze, Lu, Chin Lung
Publicado 2018

SARSA: a web tool for structural alignment of RNA using a structural alphabet

por Chang, Yen-Fu, Huang, Yen-Lin, Lu, Chin Lung
Publicado 2008

OGtree: a tool for creating genome trees of prokaryotes based on overlapping genes

por Jiang, Li-Wei, Lin, Kuang-Lun, Lu, Chin Lung
Publicado 2008

iPARTS: an improved tool of pairwise alignment of RNA tertiary structures

por Wang, Chih-Wei, Chen, Kun-Tze, Lu, Chin Lung
Publicado 2010

Sorting permutations by cut-circularize-linearize-and-paste operations

por Huang, Keng-Hsuan, Chen, Kun-Tze, Lu, Chin Lung
Publicado 2011

Assembling contigs in draft genomes using reversals and block-interchanges

por Li, Chi-Long, Chen, Kun-Tze, Lu, Chin Lung
Publicado 2013

Multi-CSAR: a multiple reference-based contig scaffolder using algebraic rearrangements

por Chen, Kun-Tze, Shen, Hsin-Ting, Lu, Chin Lung
Publicado 2018

Clover: a clustering-oriented de novo assembler for Illumina sequences

por Hsieh, Ming-Feng, Lu, Chin Lung, Tang, Chuan Yi
Publicado 2020

Multi-CSAR: a web server for scaffolding contigs using multiple reference genomes

por Liu, Shu-Cheng, Ju, Yan-Ru, Lu, Chin Lung
Publicado 2022

SPRING: a tool for the analysis of genome rearrangement using reversals and block-interchanges

por Lin, Ying Chih, Lu, Chin Lung, Liu, Ying-Chuan, Tang, Chuan Yi
Publicado 2006

Analysis of circular genome rearrangement by fusions, fissions and block-interchanges

por Lu, Chin Lung, Huang, Yen Lin, Wang, Tsui Ching, Chiu, Hsien-Tai
Publicado 2006

RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints

por Chung, Yun-Sheng, Lee, Wei-Hsun, Tang, Chuan Yi, Lu, Chin Lung
Publicado 2007

Reconstructing genome trees of prokaryotes using overlapping genes

por Cheng, Chih-Hsien, Yang, Chung-Han, Chiu, Hsien-Tai, Lu, Chin Lung
Publicado 2010

SoRT(2): a tool for sorting genomes and reconstructing phylogenetic trees by reversals, generalized transpositions and translocations

por Huang, Yen-Lin, Huang, Chen-Cheng, Tang, Chuan Yi, Lu, Chin Lung
Publicado 2010

CAR: contig assembly of prokaryotic draft genomes using rearrangements

por Lu, Chin Lung, Chen, Kun-Tze, Huang, Shih-Yuan, Chiu, Hsien-Tai
Publicado 2014

R3D-BLAST2: an improved search tool for similar RNA 3D substructures

por Yen, Ching-Yu, Lin, Jian-Cheng, Chen, Kun-Tze, Lu, Chin Lung
Publicado 2017

FASTR3D: a fast and accurate search tool for similar RNA 3D structures

por Lai, Chin-En, Tsai, Ming-Yuan, Liu, Yun-Chen, Wang, Chih-Wei, Chen, Kun-Tze, Lu, Chin Lung
Publicado 2009

Multi-CAR: a tool of contig scaffolding using multiple references

por Chen, Kun-Tze, Chen, Cheih-Jung, Shen, Hsin-Ting, Liu, Chia-Liang, Huang, Shang-Hao, Lu, Chin Lung
Publicado 2016

R3D-BLAST: a search tool for similar RNA 3D substructures

por Liu, Yun-Chen, Yang, Chung-Han, Chen, Kun-Tze, Wang, Jyun-Rong, Cheng, Mei-Ling, Chung, Jen-Chun, Chiu, Hsien-Tai, Lu, Chin Lung
Publicado 2011

iPARTS2: an improved tool for pairwise alignment of RNA tertiary structures, version 2

por Yang, Chung-Han, Shih, Cheng-Ting, Chen, Kun-Tze, Lee, Po-Han, Tsai, Ping-Han, Lin, Jian-Cheng, Yen, Ching-Yu, Lin, Tiao-Yin, Lu, Chin Lung
Publicado 2016