Efficient siRNA selection using hybridization thermodynamics

por Lu, Zhi John, Mathews, David H.
Publicado 2008

Fundamental differences in the equilibrium considerations for siRNA and antisense oligodeoxynucleotide design

por Lu, Zhi John, Mathews, David H.
Publicado 2008

OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics

por Lu, Zhi John, Mathews, David H.
Publicado 2008

A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation

por Lu, Zhi John, Turner, Douglas H., Mathews, David H.
Publicado 2006

COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features

por Hu, Long, Xu, Zhiyu, Hu, Boqin, Lu, Zhi John
Publicado 2017

The phzA2-G2 Transcript Exhibits Direct RsmA-Mediated Activation in Pseudomonas aeruginosa M18

por Ren, Bin, Shen, Huifeng, Lu, Zhi John, Liu, Haiming, Xu, Yuquan
Publicado 2014

POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins

por Hu, Boqin, Yang, Yu-Cheng T., Huang, Yiming, Zhu, Yumin, Lu, Zhi John
Publicado 2017

Large-scale mapping of mammalian transcriptomes identifies conserved genes associated with different cell states

por Yang, Yang, Yang, Yu-Cheng T., Yuan, Jiapei, Lu, Zhi John, Li, Jingyi Jessica
Publicado 2017

Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project

por Mu, Xinmeng Jasmine, Lu, Zhi John, Kong, Yong, Lam, Hugo Y. K., Gerstein, Mark B.
Publicado 2011

RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data

por Wu, Yang, Qu, Rihao, Huang, Yiming, Shi, Binbin, Liu, Mengrong, Li, Yang, Lu, Zhi John
Publicado 2016

RNA Biomarkers: Frontier of Precision Medicine for Cancer

por Xi, Xiaochen, Li, Tianxiao, Huang, Yiming, Sun, Jiahui, Zhu, Yumin, Yang, Yang, Lu, Zhi John
Publicado 2017

Selective translation by alternative bacterial ribosomes

por Chen, Yu-Xiang, Xu, Zhi-yu, Ge, Xueliang, Sanyal, Suparna, Lu, Zhi John, Javid, Babak
Publicado 2020

Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana

por Yuan, Jiapei, Zhang, Ye, Dong, Jinsong, Sun, Yuzhe, Lim, Boon L., Liu, Dong, Lu, Zhi John
Publicado 2016

RISE: a database of RNA interactome from sequencing experiments

por Gong, Jing, Shao, Di, Xu, Kui, Lu, Zhipeng, Lu, Zhi John, Yang, Yucheng T, Zhang, Qiangfeng Cliff
Publicado 2018

Identification of high-confidence RNA regulatory elements by combinatorial classification of RNA–protein binding sites

por Li, Yang Eric, Xiao, Mu, Shi, Binbin, Yang, Yu-Cheng T., Wang, Dong, Wang, Fei, Marcia, Marco, Lu, Zhi John
Publicado 2017

POSTAR2: deciphering the post-transcriptional regulatory logics

por Zhu, Yumin, Xu, Gang, Yang, Yucheng T, Xu, Zhiyu, Chen, Xinduo, Shi, Binbin, Xie, Daoxin, Lu, Zhi John, Wang, Pengyuan
Publicado 2019

CLIPdb: a CLIP-seq database for protein-RNA interactions

por Yang, Yu-Cheng T, Di, Chao, Hu, Boqin, Zhou, Meifeng, Liu, Yifang, Song, Nanxi, Li, Yang, Umetsu, Jumpei, Lu, Zhi John
Publicado 2015

Arabidopsis exoribonuclease USB1 interacts with the PPR-domain protein SOAR1 to negatively regulate abscisic acid signaling

por Ma, Yu, Zhang, Shang, Bi, Chao, Mei, Chao, Jiang, Shang-Chuan, Wang, Xiao-Fang, Lu, Zhi John, Zhang, Da-Peng
Publicado 2020

Regulatory Feedback Loop of Two phz Gene Clusters through 5′-Untranslated Regions in Pseudomonas sp. M18

por Li, Yaqian, Du, Xilin, Lu, Zhi John, Wu, Daqiang, Zhao, Yilei, Ren, Bin, Huang, Jiaofang, Huang, Xianqing, Xu, Yuhong, Xu, Yuquan
Publicado 2011

Long non-coding RNA DARS-AS1 promotes tumor progression by directly suppressing PACT-mediated cellular stress

por Yang, Liuqing, Lin, Kequan, Zhu, Lin, Wang, Huili, Teng, Shuaishuai, Huang, Lijun, Zhou, Shiyi, Zhang, Guanbin, Lu, Zhi John, Wang, Dong
Publicado 2022