BetaBuddy: An end-to-end computer vision pipeline for the automated analysis of insulin secreting β-cells

por Alsup, Anne M., Fowlds, Kelli, Cho, Michael, Luber, Jacob M.
Publicado 2023

Aether: leveraging linear programming for optimal cloud computing in genomics

por Luber, Jacob M, Tierney, Braden T, Cofer, Evan M, Patel, Chirag J, Kostic, Aleksandar D
Publicado 2018

A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type

por Le Goallec, Alan, Tierney, Braden T., Luber, Jacob M., Cofer, Evan M., Kostic, Aleksandar D., Patel, Chirag J.
Publicado 2020

HiGlass: web-based visual exploration and analysis of genome interaction maps

por Kerpedjiev, Peter, Abdennur, Nezar, Lekschas, Fritz, McCallum, Chuck, Dinkla, Kasper, Strobelt, Hendrik, Luber, Jacob M., Ouellette, Scott B., Azhir, Alaleh, Kumar, Nikhil, Hwang, Jeewon, Lee, Soohyun, Alver, Burak H., Pfister, Hanspeter, Mirny, Leonid A., Park, Peter J., Gehlenborg, Nils
Publicado 2018

Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing

por Fang, Chao, Zhong, Huanzi, Lin, Yuxiang, Chen, Bing, Han, Mo, Ren, Huahui, Lu, Haorong, Luber, Jacob M, Xia, Min, Li, Wangsheng, Stein, Shayna, Xu, Xun, Zhang, Wenwei, Drmanac, Radoje, Wang, Jian, Yang, Huanming, Hammarström, Lennart, Kostic, Aleksandar D, Kristiansen, Karsten, Li, Junhua
Publicado 2017

Meta’omic analysis of elite athletes identifies a performance-enhancing microbe that functions via lactate metabolism

por Scheiman, Jonathan, Luber, Jacob M., Chavkin, Theodore A., MacDonald, Tara, Tung, Angela, Pham, Loc-Duyen, Wibowo, Marsha C., Wurth, Renee C., Punthambaker, Sukanya, Tierney, Braden T., Yang, Zhen, Hattab, Mohammad W., Avila-Pacheco, Julian, Clish, Clary B., Lessard, Sarah, Church, George M., Kostic, Aleksandar D.
Publicado 2019

Layilin augments integrin activation to promote antitumor immunity

por Mahuron, Kelly M., Moreau, Joshua M., Glasgow, Jeff E., Boda, Devi P., Pauli, Mariela L., Gouirand, Victoire, Panjabi, Luv, Grewal, Robby, Luber, Jacob M., Mathur, Anubhav N., Feldman, Renny M., Shifrut, Eric, Mehta, Pooja, Lowe, Margaret M., Alvarado, Michael D., Marson, Alexander, Singer, Meromit, Wells, Jim, Jupp, Ray, Daud, Adil I., Rosenblum, Michael D.
Publicado 2020

Single-cell analyses identify circulating anti-tumor CD8 T cells and markers for their enrichment

por Pauken, Kristen E., Shahid, Osmaan, Lagattuta, Kaitlyn A., Mahuron, Kelly M., Luber, Jacob M., Lowe, Margaret M., Huang, Linglin, Delaney, Conor, Long, Jaclyn M., Fung, Megan E., Newcomer, Kathleen, Tsai, Katy K., Chow, Melissa, Guinn, Samantha, Kuchroo, Juhi R., Burke, Kelly P., Schenkel, Jason M., Rosenblum, Michael D., Daud, Adil I., Sharpe, Arlene H., Singer, Meromit
Publicado 2021

Reconstruction of ancient microbial genomes from the human gut

por Wibowo, Marsha C., Yang, Zhen, Borry, Maxime, Hübner, Alexander, Huang, Kun D., Tierney, Braden T., Zimmerman, Samuel, Barajas-Olmos, Francisco, Contreras-Cubas, Cecilia, García-Ortiz, Humberto, Martínez-Hernández, Angélica, Luber, Jacob M., Kirstahler, Philipp, Blohm, Tre, Smiley, Francis E., Arnold, Richard, Ballal, Sonia A., Pamp, Sünje Johanna, Russ, Julia, Maixner, Frank, Rota-Stabelli, Omar, Segata, Nicola, Reinhard, Karl, Orozco, Lorena, Warinner, Christina, Snow, Meradeth, LeBlanc, Steven, Kostic, Aleksandar D.
Publicado 2021