De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly

por Lun, Aaron T.L., Smyth, Gordon K.
Publicado 2014

diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data

por Lun, Aaron T.L., Smyth, Gordon K.
Publicado 2015

csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows

por Lun, Aaron T.L., Smyth, Gordon K.
Publicado 2016

FluShuffle and FluResort: new algorithms to identify reassorted strains of the influenza virus by mass spectrometry

por Lun, Aaron TL, Wong, Jason WH, Downard, Kevin M
Publicado 2012

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor

por Lun, Aaron T.L., McCarthy, Davis J., Marioni, John C.
Publicado 2016

iSEE: Interactive SummarizedExperiment Explorer

por Rue-Albrecht, Kevin, Marini, Federico, Soneson, Charlotte, Lun, Aaron T.L.
Publicado 2018

Assessing the reliability of spike-in normalization for analyses of single-cell RNA sequencing data

por Lun, Aaron T.L., Calero-Nieto, Fernando J., Haim-Vilmovsky, Liora, Göttgens, Berthold, Marioni, John C.
Publicado 2017

Transcriptome and H3K27 tri-methylation profiling of Ezh2-deficient lung epithelium

por Holik, Aliaksei Z., Galvis, Laura A., Lun, Aaron T.L., Ritchie, Matthew E., Asselin-Labat, Marie-Liesse
Publicado 2015

Locus-specific expression of transposable elements in single cells with CELLO-seq

por Berrens, Rebecca V, Yang, Andrian, Laumer, Christopher E, Lun, Aaron TL, Bieberich, Florian, Law, Cheuk-Ting, Lan, Guocheng, Imaz, Maria, Bowness, Joseph S, Brockdorff, Neil, Gaffney, Daniel, Marioni, John C
Publicado 2022

Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations

por Taberlay, Phillippa C., Achinger-Kawecka, Joanna, Lun, Aaron T.L., Buske, Fabian A., Sabir, Kenneth, Gould, Cathryn M., Zotenko, Elena, Bert, Saul A., Giles, Katherine A., Bauer, Denis C., Smyth, Gordon K., Stirzaker, Clare, O'Donoghue, Sean I., Clark, Susan J.
Publicado 2016

Isolation and Comparative Transcriptome Analysis of Human Fetal and iPSC-Derived Cone Photoreceptor Cells

por Welby, Emily, Lakowski, Jorn, Di Foggia, Valentina, Budinger, Dimitri, Gonzalez-Cordero, Anai, Lun, Aaron T.L., Epstein, Michael, Patel, Aara, Cuevas, Elisa, Kruczek, Kamil, Naeem, Arifa, Minneci, Federico, Hubank, Mike, Jones, David T., Marioni, John C., Ali, Robin R., Sowden, Jane C.
Publicado 2017

COMRADES determines in vivo RNA structures and interactions

por Ziv, Omer, Gabryelska, Marta M., Lun, Aaron T.L., Gebert, Luca F.R., Sheu-Gruttadauria, Jessica, Meredith, Luke W., Liu, Zhong-Yu, Kwok, Chun Kit, Qin, Cheng-Feng, Macrae, Ian J., Goodfellow, Ian, Marioni, John C., Kudla, Grzegorz, Miska, Eric A.
Publicado 2018