StonPy: a tool to parse and query collections of SBGN maps in a graph database

por Rougny, Adrien, Balaur, Irina, Luna, Augustin, Mazein, Alexander
Publicado 2023

cyjShiny: A cytoscape.js R Shiny Widget for network visualization and analysis

por Luna, Augustin, Shah, Omar, Sander, Chris, Shannon, Paul
Publicado 2023

SIRT1/PARP1 crosstalk: connecting DNA damage and metabolism

por Luna, Augustin, Aladjem, Mirit I, Kohn, Kurt W
Publicado 2013

A pan-cancer survey of cell line tumor similarity by feature-weighted molecular profiles

por Sinha, Rileen, Luna, Augustin, Schultz, Nikolaus, Sander, Chris
Publicado 2021

Mapping the functional interactions at the tumor-immune checkpoint interface

por Bozorgui, Behnaz, Kong, Elisabeth K., Luna, Augustin, Korkut, Anil
Publicado 2023

netboxr: Automated discovery of biological process modules by network analysis in R

por Liu, Eric Minwei, Luna, Augustin, Dong, Guanlan, Sander, Chris
Publicado 2020

PaxtoolsR: pathway analysis in R using Pathway Commons

por Luna, Augustin, Babur, Özgün, Aksoy, Bülent Arman, Demir, Emek, Sander, Chris
Publicado 2016

Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response

por Luna, Augustin, McFadden, Geoffrey B., Aladjem, Mirit I., Kohn, Kurt W.
Publicado 2015

Gene Expression Profiles of the NCI-60 Human Tumor Cell Lines Define Molecular Interaction Networks Governing Cell Migration Processes

por Kohn, Kurt W., Zeeberg, Barry R., Reinhold, William C., Sunshine, Margot, Luna, Augustin, Pommier, Yves
Publicado 2012

A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method

por Luna, Augustin, Karac, Evrim I, Sunshine, Margot, Chang, Lucas, Nussinov, Ruth, Aladjem, Mirit I, Kohn, Kurt W
Publicado 2011

AlignmentViewer: Sequence Analysis of Large Protein Families

por Reguant, Roc, Antipin, Yevgeniy, Sheridan, Rob, Dallago, Christian, Diamantoukos, Drew, Luna, Augustin, Sander, Chris, Gauthier, Nicholas Paul
Publicado 2020

Systems biology graphical notation markup language (SBGNML) version 0.3

por Bergmann, Frank T., Czauderna, Tobias, Dogrusoz, Ugur, Rougny, Adrien, Dräger, Andreas, Touré, Vasundra, Mazein, Alexander, Blinov, Michael L., Luna, Augustin
Publicado 2020

Analyzing causal relationships in proteomic profiles using CausalPath

por Luna, Augustin, Siper, Metin Can, Korkut, Anil, Durupinar, Funda, Dogrusoz, Ugur, Aslan, Joseph E., Sander, Chris, Demir, Emek, Babur, Ozgun
Publicado 2021

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

por Way, Gregory P., Sanchez-Vega, Francisco, La, Konnor, Armenia, Joshua, Chatila, Walid K., Luna, Augustin, Sander, Chris, Cherniack, Andrew D., Mina, Marco, Ciriello, Giovanni, Schultz, Nikolaus, Sanchez, Yolanda, Greene, Casey S.
Publicado 2018

Causal interactions from proteomic profiles: Molecular data meet pathway knowledge

por Babur, Özgün, Luna, Augustin, Korkut, Anil, Durupinar, Funda, Siper, Metin Can, Dogrusoz, Ugur, Vaca Jacome, Alvaro Sebastian, Peckner, Ryan, Christianson, Karen E., Jaffe, Jacob D., Spellman, Paul T., Aslan, Joseph E., Sander, Chris, Demir, Emek
Publicado 2021

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0

por Rougny, Adrien, Touré, Vasundra, Moodie, Stuart, Balaur, Irina, Czauderna, Tobias, Borlinghaus, Hanna, Dogrusoz, Ugur, Mazein, Alexander, Dräger, Andreas, Blinov, Michael L., Villéger, Alice, Haw, Robin, Demir, Emek, Mi, Huaiyu, Sorokin, Anatoly, Schreiber, Falk, Luna, Augustin
Publicado 2019

Author-sourced capture of pathway knowledge in computable form using Biofactoid

por Wong, Jeffrey V, Franz, Max, Siper, Metin Can, Fong, Dylan, Durupinar, Funda, Dallago, Christian, Luna, Augustin, Giorgi, John, Rodchenkov, Igor, Babur, Özgün, Bachman, John A, Gyori, Benjamin M, Demir, Emek, Bader, Gary D, Sander, Chris
Publicado 2021

Software support for SBGN maps: SBGN-ML and LibSBGN

por van Iersel, Martijn P., Villéger, Alice C., Czauderna, Tobias, Boyd, Sarah E., Bergmann, Frank T., Luna, Augustin, Demir, Emek, Sorokin, Anatoly, Dogrusoz, Ugur, Matsuoka, Yukiko, Funahashi, Akira, Aladjem, Mirit I., Mi, Huaiyu, Moodie, Stuart L., Kitano, Hiroaki, Le Novère, Nicolas, Schreiber, Falk
Publicado 2012

CellMinerCDB for Integrative Cross-Database Genomics and Pharmacogenomics Analyses of Cancer Cell Lines

por Rajapakse, Vinodh N., Luna, Augustin, Yamade, Mihoko, Loman, Lisa, Varma, Sudhir, Sunshine, Margot, Iorio, Francesco, Sousa, Fabricio G., Elloumi, Fathi, Aladjem, Mirit I., Thomas, Anish, Sander, Chris, Kohn, Kurt W., Benes, Cyril H., Garnett, Mathew, Reinhold, William C., Pommier, Yves
Publicado 2018

The digital revolution in phenotyping

por Oellrich, Anika, Collier, Nigel, Groza, Tudor, Rebholz-Schuhmann, Dietrich, Shah, Nigam, Bodenreider, Olivier, Boland, Mary Regina, Georgiev, Ivo, Liu, Hongfang, Livingston, Kevin, Luna, Augustin, Mallon, Ann-Marie, Manda, Prashanti, Robinson, Peter N., Rustici, Gabriella, Simon, Michelle, Wang, Liqin, Winnenburg, Rainer, Dumontier, Michel
Publicado 2016