Complete RNA-seq analysis of cancer transcriptomes from FFPE samples

por Luo, Shujun, Khrebtukova, Irina, Perou, Chuck, Schroth, Gary P
Publicado 2010

Meraculous: De Novo Genome Assembly with Short Paired-End Reads

por Chapman, Jarrod A., Ho, Isaac, Sunkara, Sirisha, Luo, Shujun, Schroth, Gary P., Rokhsar, Daniel S.
Publicado 2011

Noncanonical Compensation of Zygotic X Transcription in Early Drosophila melanogaster Development Revealed through Single-Embryo RNA-Seq

por Lott, Susan E., Villalta, Jacqueline E., Schroth, Gary P., Luo, Shujun, Tonkin, Leath A., Eisen, Michael B.
Publicado 2011

Single-neuron RNA-Seq: technical feasibility and reproducibility

por Qiu, Shenfeng, Luo, Shujun, Evgrafov, Oleg, Li, Robin, Schroth, Gary P., Levitt, Pat, Knowles, James A., Wang, Kai
Publicado 2012

Erratum: Single-neuron RNA-Seq: technical feasibility and reproducibility

por Qiu, Shenfeng, Luo, Shujun, Evgrafov, Oleg, Li, Robin, Schroth, Gary P., Levitt, Pat, Knowles, James A., Wang, Kai
Publicado 2013

Highly sensitive and specific microRNA expression profiling using BeadArray technology

por Chen, Jing, Lozach, Jean, Garcia, Eliza Wickham, Barnes, Bret, Luo, Shujun, Mikoulitch, Ivan, Zhou, Lixin, Schroth, Gary, Fan, Jian-Bing
Publicado 2008

Alternative Isoform Regulation in Human Tissue Transcriptomes

por Wang, Eric T., Sandberg, Rickard, Luo, Shujun, Khrebtukova, Irina, Zhang, Lu, Mayr, Christine, Kingsmore, Stephen F., Schroth, Gary P., Burge, Christopher B.
Publicado 2008

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq

por Yi, Hana, Cho, Yong-Joon, Won, Sungho, Lee, Jong-Eun, Jin Yu, Hyung, Kim, Sujin, Schroth, Gary P., Luo, Shujun, Chun, Jongsik
Publicado 2011

Transcriptome Sequencing, Microarray, and Proteomic Analyses Reveal Cellular and Metabolic Impact of Hepatitis C Virus Infection In Vitro

por Woodhouse, Stephen D, Narayan, Ramamurthy, Latham, Sally, Lee, Sheena, Antrobus, Robin, Gangadharan, Bevin, Luo, Shujun, Schroth, Gary P, Klenerman, Paul, Zitzmann, Nicole
Publicado 2010

High-Throughput SuperSAGE for Digital Gene Expression Analysis of Multiple Samples Using Next Generation Sequencing

por Matsumura, Hideo, Yoshida, Kentaro, Luo, Shujun, Kimura, Eiji, Fujibe, Takahiro, Albertyn, Zayed, Barrero, Roberto A., Krüger, Detlev H., Kahl, Günter, Schroth, Gary P., Terauchi, Ryohei
Publicado 2010

mRNA-Seq of Single Prostate Cancer Circulating Tumor Cells Reveals Recapitulation of Gene Expression and Pathways Found in Prostate Cancer

por Cann, Gordon M., Gulzar, Zulfiqar G., Cooper, Samantha, Li, Robin, Luo, Shujun, Tat, Mai, Stuart, Sarah, Schroth, Gary, Srinivas, Sandhya, Ronaghi, Mostafa, Brooks, James D., Talasaz, AmirAli H.
Publicado 2012

Full-Length mRNA-Seq from single cell levels of RNA and individual circulating tumor cells

por Ramsköld, Daniel, Luo, Shujun, Wang, Yu-Chieh, Li, Robin, Deng, Qiaolin, Faridani, Omid R., Daniels, Gregory A., Khrebtukova, Irina, Loring, Jeanne F., Laurent, Louise C., Schroth, Gary P., Sandberg, Rickard
Publicado 2012

A mutation in TGFB3 associated with a syndrome of low muscle mass, growth retardation, distal arthrogryposis and clinical features overlapping with marfan and loeys–dietz syndrome...

por Rienhoff, Hugh Young, Yeo, Chang-Yeol, Morissette, Rachel, Khrebtukova, Irina, Melnick, Jonathan, Luo, Shujun, Leng, Nan, Kim, Yeon-Jin, Schroth, Gary, Westwick, John, Vogel, Hannes, McDonnell, Nazli, Hall, Judith G, Whitman, Malcolm
Publicado 2013

Global analysis of estrogen receptor beta binding to breast cancer cell genome reveals an extensive interplay with estrogen receptor alpha for target gene regulation

por Grober, Oli MV, Mutarelli, Margherita, Giurato, Giorgio, Ravo, Maria, Cicatiello, Luigi, De Filippo, Maria Rosaria, Ferraro, Lorenzo, Nassa, Giovanni, Papa, Maria Francesca, Paris, Ornella, Tarallo, Roberta, Luo, Shujun, Schroth, Gary P, Benes, Vladimir, Weisz, Alessandro
Publicado 2011

Integrated Analysis of Gene Expression, CpG Island Methylation, and Gene Copy Number in Breast Cancer Cells by Deep Sequencing

por Sun, Zhifu, Asmann, Yan W., Kalari, Krishna R., Bot, Brian, Eckel-Passow, Jeanette E., Baker, Tiffany R., Carr, Jennifer M., Khrebtukova, Irina, Luo, Shujun, Zhang, Lu, Schroth, Gary P., Perez, Edith A., Thompson, E. Aubrey
Publicado 2011

Integrative Deep Sequencing of the Mouse Lung Transcriptome Reveals Differential Expression of Diverse Classes of Small RNAs in Response to Respiratory Virus Infection

por Peng, Xinxia, Gralinski, Lisa, Ferris, Martin T., Frieman, Matthew B., Thomas, Matthew J., Proll, Sean, Korth, Marcus J., Tisoncik, Jennifer R., Heise, Mark, Luo, Shujun, Schroth, Gary P., Tumpey, Terrence M., Li, Chengjun, Kawaoka, Yoshihiro, Baric, Ralph S., Katze, Michael G.
Publicado 2011

High prevalence of focal and multi-focal somatic genetic variants in the human brain

por Keogh, Michael J., Wei, Wei, Aryaman, Juvid, Walker, Lauren, van den Ameele, Jelle, Coxhead, Jon, Wilson, Ian, Bashton, Matthew, Beck, Jon, West, John, Chen, Richard, Haudenschild, Christian, Bartha, Gabor, Luo, Shujun, Morris, Chris M., Jones, Nick S., Attems, Johannes, Chinnery, Patrick F.
Publicado 2018

Achieving high-sensitivity for clinical applications using augmented exome sequencing

por Patwardhan, Anil, Harris, Jason, Leng, Nan, Bartha, Gabor, Church, Deanna M., Luo, Shujun, Haudenschild, Christian, Pratt, Mark, Zook, Justin, Salit, Marc, Tirch, Jeanie, Morra, Massimo, Chervitz, Stephen, Li, Ming, Clark, Michael, Garcia, Sarah, Chandratillake, Gemma, Kirk, Scott, Ashley, Euan, Snyder, Michael, Altman, Russ, Bustamante, Carlos, Butte, Atul J., West, John, Chen, Richard
Publicado 2015

Genomic Complexity Predicts Resistance to Endocrine Therapy and CDK4/6 Inhibition in Hormone Receptor–Positive (HR+)/HER2-Negative Metastatic Breast Cancer

por Davis, Andrew A., Luo, Jingqin, Zheng, Tiantian, Dai, Chao, Dong, Xiaoxi, Tan, Lu, Suresh, Rama, Ademuyiwa, Foluso O., Rigden, Caron, Rearden, Timothy P., Clifton, Katherine, Weilbaecher, Katherine, Frith, Ashley, Tandra, Pavan K., Summa, Tracy, Haas, Brittney, Thomas, Shana, Hernandez-Aya, Leonel F., Peterson, Lindsay L., Wang, Xiaohong, Luo, Shujun J., Zhou, Kemin, Du, Pan, Jia, Shidong, King, Bonnie L., Krishnamurthy, Jairam, Ma, Cynthia X.
Publicado 2023

Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis

por Baranzini, Sergio E., Mudge, Joann, van Velkinburgh, Jennifer C., Khankhanian, Pouya, Khrebtukova, Irina, Miller, Neil A., Zhang, Lu, Farmer, Andrew D., Bell, Callum J., Kim, Ryan W., May, Gregory D., Woodward, Jimmy E., Caillier, Stacy J., McElroy, Joseph P., Gomez, Refujia, Pando, Marcelo J., Clendenen, Leonda E., Ganusova, Elena E., Schilkey, Faye D., Ramaraj, Thiruvarangan, Khan, Omar A., Huntley, Jim J., Luo, Shujun, Kwok, Pui-yan, Wu, Thomas D., Schroth, Gary P., Oksenberg, Jorge R., Hauser, Stephen L., Kingsmore, Stephen F.
Publicado 2010