Disclosing the crosstalk among DNA methylation, transcription factors, and histone marks in human pluripotent cells through discovery of DNA methylation motifs

por Luu, Phuc-Loi, Schöler, Hans R., Araúzo-Bravo, Marcos J.
Publicado 2013

Benchmark study comparing liftover tools for genome conversion of epigenome sequencing data

por Luu, Phuc-Loi, Ong, Phuc-Thinh, Dinh, Thanh-Phuoc, Clark, Susan J
Publicado 2020

Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA

por Skvortsova, Ksenia, Zotenko, Elena, Luu, Phuc-Loi, Gould, Cathryn M., Nair, Shalima S., Clark, Susan J., Stirzaker, Clare
Publicado 2017

MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection

por Luu, Phuc-Loi, Ong, Phuc-Thinh, Loc, Tran Thai Huu, Lam, Dilys, Pidsley, Ruth, Stirzaker, Clare, Clark, Susan J
Publicado 2020

Comprehensive evaluation of targeted multiplex bisulphite PCR sequencing for validation of DNA methylation biomarker panels

por Lam, Dilys, Luu, Phuc-Loi, Song, Jenny Z., Qu, Wenjia, Risbridger, Gail P., Lawrence, Mitchell G., Lu, Jennifer, Trau, Matt, Korbie, Darren, Clark, Susan J., Pidsley, Ruth, Stirzaker, Clare
Publicado 2020

BRG1 knockdown inhibits proliferation through multiple cellular pathways in prostate cancer

por Giles, Katherine A., Gould, Cathryn M., Achinger-Kawecka, Joanna, Page, Scott G., Kafer, Georgia R., Rogers, Samuel, Luu, Phuc-Loi, Cesare, Anthony J., Clark, Susan J., Taberlay, Phillippa C.
Publicado 2021

Comprehensive methylome sequencing reveals prognostic epigenetic biomarkers for prostate cancer mortality

por Pidsley, Ruth, Lam, Dilys, Qu, Wenjia, Peters, Timothy J., Luu, Phuc‐Loi, Korbie, Darren, Stirzaker, Clare, Daly, Roger J., Stricker, Phillip, Kench, James G., Horvath, Lisa G., Clark, Susan J.
Publicado 2022

Identification of DNA methylation biomarkers with potential to predict response to neoadjuvant chemotherapy in triple-negative breast cancer

por Meyer, Braydon, Clifton, Samuel, Locke, Warwick, Luu, Phuc-Loi, Du, Qian, Lam, Dilys, Armstrong, Nicola J., Kumar, Beena, Deng, Niantao, Harvey, Kate, Swarbrick, Alex, Ganju, Vinod, Clark, Susan J., Pidsley, Ruth, Stirzaker, Clare
Publicado 2021

Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer

por Du, Qian, Bert, Saul A., Armstrong, Nicola J., Caldon, C. Elizabeth, Song, Jenny Z., Nair, Shalima S., Gould, Cathryn M., Luu, Phuc-Loi, Peters, Timothy, Khoury, Amanda, Qu, Wenjia, Zotenko, Elena, Stirzaker, Clare, Clark, Susan J.
Publicado 2019

Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains

por Khoury, Amanda, Achinger-Kawecka, Joanna, Bert, Saul A., Smith, Grady C., French, Hugh J., Luu, Phuc-Loi, Peters, Timothy J., Du, Qian, Parry, Aled J., Valdes-Mora, Fatima, Taberlay, Phillippa C., Stirzaker, Clare, Statham, Aaron L., Clark, Susan J.
Publicado 2020

Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten

por Nair, Shalima S., Luu, Phuc-Loi, Qu, Wenjia, Maddugoda, Madhavi, Huschtscha, Lily, Reddel, Roger, Chenevix-Trench, Georgia, Toso, Martina, Kench, James G., Horvath, Lisa G., Hayes, Vanessa M., Stricker, Phillip D., Hughes, Timothy P., White, Deborah L., Rasko, John E. J., Wong, Justin J.-L., Clark, Susan J.
Publicado 2018

Widespread Aberrant Alternative Splicing despite Molecular Remission in Chronic Myeloid Leukaemia Patients

por Schmitz, Ulf, Shah, Jaynish S., Dhungel, Bijay P., Monteuuis, Geoffray, Luu, Phuc-Loi, Petrova, Veronika, Metierre, Cynthia, Nair, Shalima S., Bailey, Charles G., Saunders, Verity A., Turhan, Ali G., White, Deborah L., Branford, Susan, Clark, Susan J., Hughes, Timothy P., Wong, Justin J.-L., Rasko, John E.J.
Publicado 2020

Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine-resistant breast cancer

por Achinger-Kawecka, Joanna, Valdes-Mora, Fatima, Luu, Phuc-Loi, Giles, Katherine A., Caldon, C. Elizabeth, Qu, Wenjia, Nair, Shalima, Soto, Sebastian, Locke, Warwick J., Yeo-Teh, Nicole S., Gould, Cathryn M., Du, Qian, Smith, Grady C., Ramos, Irene R., Fernandez, Kristine F., Hoon, Dave S., Gee, Julia M. W., Stirzaker, Clare, Clark, Susan J.
Publicado 2020