BeadDataPackR: A Tool to Facilitate the Sharing of Raw Data from Illumina BeadArray Studies

por Smith, Mike L., Lynch, Andy G.
Publicado 2010

Quantifying the impact of inter-site heterogeneity on the distribution of ChIP-seq data

por Cairns, Jonathan, Lynch, Andy G., Tavaré, Simon
Publicado 2014

multiSNV: a probabilistic approach for improving detection of somatic point mutations from multiple related tumour samples

por Josephidou, Malvina, Lynch, Andy G., Tavaré, Simon
Publicado 2015

Different laterality indexes are poorly correlated with one another but consistently show the tendency of males and females to be more left- and right-lateralized, respectively

por Buenaventura Castillo, Carlos, Lynch, Andy G., Paracchini, Silvia
Publicado 2020

BayesPeak: Bayesian analysis of ChIP-seq data

por Spyrou, Christiana, Stark, Rory, Lynch, Andy G, Tavaré, Simon
Publicado 2009

Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data

por Farmery, James H. R., Smith, Mike L., Lynch, Andy G.
Publicado 2018

Publisher Correction: Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data

por Farmery, James H. R., Smith, Mike L., Lynch, Andy G.
Publicado 2018

Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data

por Smith, Mike L, Dunning, Mark J, Tavaré, Simon, Lynch, Andy G
Publicado 2010

BayesPeak—an R package for analysing ChIP-seq data

por Cairns, Jonathan, Spyrou, Christiana, Stark, Rory, Smith, Mike L., Lynch, Andy G., Tavaré, Simon
Publicado 2011

BeadArray Expression Analysis Using Bioconductor

por Ritchie, Matthew E., Dunning, Mark J., Smith, Mike L., Shi, Wei, Lynch, Andy G.
Publicado 2011

Missing channels in two-colour microarray experiments: Combining single-channel and two-channel data

por Lynch, Andy G, Neal, David E, Kelly, John D, Burtt, Glyn J, Thorne, Natalie P
Publicado 2007

Statistical issues in the analysis of Illumina data

por Dunning, Mark J, Barbosa-Morais, Nuno L, Lynch, Andy G, Tavaré, Simon, Ritchie, Matthew E
Publicado 2008

Spike-in validation of an Illumina-specific variance-stabilizing transformation

por Dunning, Mark J, Ritchie, Matthew E, Barbosa-Morais, Nuno L, Tavaré, Simon, Lynch, Andy G
Publicado 2008

The cost of reducing starting RNA quantity for Illumina BeadArrays: A bead-level dilution experiment

por Lynch, Andy G, Hadfield, James, Dunning, Mark J, Osborne, Michelle, Thorne, Natalie P, Tavaré, Simon
Publicado 2010

Calling Sample Mix-Ups in Cancer Population Studies

por Lynch, Andy G., Chin, Suet-Feung, Dunning, Mark J., Caldas, Carlos, Tavaré, Simon, Curtis, Christina
Publicado 2012

New androgen receptor genomic targets show an interaction with the ETS1 transcription factor

por Massie, Charles E, Adryan, Boris, Barbosa-Morais, Nuno L, Lynch, Andy G, Tran, Maxine G, Neal, David E, Mills, Ian G
Publicado 2007

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data

por Barbosa-Morais, Nuno L., Dunning, Mark J., Samarajiwa, Shamith A., Darot, Jeremy F. J., Ritchie, Matthew E., Lynch, Andy G., Tavaré, Simon
Publicado 2010

Mining Human Prostate Cancer Datasets: The “camcAPP” Shiny App()

por Dunning, Mark J., Vowler, Sarah L., Lalonde, Emilie, Ross-Adams, Helen, Boutros, Paul, Mills, Ian G., Lynch, Andy G., Lamb, Alastair D.
Publicado 2017

Whole-genome sequencing of nine esophageal adenocarcinoma cell lines

por Contino, Gianmarco, Eldridge, Matthew D., Secrier, Maria, Bower, Lawrence, Fels Elliott, Rachael, Weaver, Jamie, Lynch, Andy G., Edwards, Paul A.W., Fitzgerald, Rebecca C.
Publicado 2016

The pitfalls of platform comparison: DNA copy number array technologies assessed

por Curtis, Christina, Lynch, Andy G, Dunning, Mark J, Spiteri, Inmaculada, Marioni, John C, Hadfield, James, Chin, Suet-Feung, Brenton, James D, Tavaré, Simon, Caldas, Carlos
Publicado 2009