Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction

por Gomes, Antonio L.C., Abeel, Thomas, Peterson, Matthew, Azizi, Elham, Lyubetskaya, Anna, Carvalho, Luís, Galagan, James
Publicado 2014

Adipocytes fail to maintain cellular identity during obesity due to reduced PPARγ activity and elevated TGFβ-SMAD signaling

por Roh, Hyun Cheol, Kumari, Manju, Taleb, Solaema, Tenen, Danielle, Jacobs, Christopher, Lyubetskaya, Anna, Tsai, Linus T.-Y., Rosen, Evan D.
Publicado 2020

Role of intragenic binding of cAMP responsive protein (CRP) in regulation of the succinate dehydrogenase genes Rv0249c-Rv0247c in TB complex mycobacteria

por Knapp, Gwendowlyn S., Lyubetskaya, Anna, Peterson, Matthew W., Gomes, Antonio L.C., Ma, Zhuo, Galagan, James E., McDonough, Kathleen A.
Publicado 2015

Characterization of a cAMP responsive transcription factor, Cmr (Rv1675c), in TB complex mycobacteria reveals overlap with the DosR (DevR) dormancy regulon

por Ranganathan, Sridevi, Bai, Guangchun, Lyubetskaya, Anna, Knapp, Gwendowlyn S., Peterson, Matthew W., Gazdik, Michaela, C. Gomes, Antonio L., Galagan, James E., McDonough, Kathleen A.
Publicado 2016

Dnmt3a is an epigenetic mediator of adipose insulin resistance

por You, Dongjoo, Nilsson, Emma, Tenen, Danielle E, Lyubetskaya, Anna, Lo, James C, Jiang, Rencong, Deng, Jasmine, Dawes, Brian A, Vaag, Allan, Ling, Charlotte, Rosen, Evan D, Kang, Sona
Publicado 2017

Comprehensive Definition of the SigH Regulon of Mycobacterium tuberculosis Reveals Transcriptional Control of Diverse Stress Responses

por Sharp, Jared D., Singh, Atul K., Park, Sang Tae, Lyubetskaya, Anna, Peterson, Matthew W., Gomes, Antonio L. C., Potluri, Lakshmi-Prasad, Raman, Sahadevan, Galagan, James E., Husson, Robert N.
Publicado 2016

A Molecular Census of Arcuate Hypothalamus and Median Eminence Cell Types

por Campbell, John N., Macosko, Evan Z., Fenselau, Henning, Pers, Tune H., Lyubetskaya, Anna, Tenen, Danielle, Goldman, Melissa, Verstegen, Anne M.J., Resch, Jon M., McCarroll, Steven A., Rosen, Evan D., Lowell, Bradford B., Tsai, Linus
Publicado 2017

Assessment of spatial transcriptomics for oncology discovery

por Lyubetskaya, Anna, Rabe, Brian, Fisher, Andrew, Lewin, Anne, Neuhaus, Isaac, Brett, Constance, Brett, Todd, Pereira, Ethel, Golhar, Ryan, Kebede, Sami, Font-Tello, Alba, Mosure, Kathy, Van Wittenberghe, Nicholas, Mavrakis, Konstantinos J., MacIsaac, Kenzie, Chen, Benjamin J., Drokhlyansky, Eugene
Publicado 2022

Genome-Wide Characterization of Light-Regulated Genes in Neurospora crassa

por Wu, Cheng, Yang, Fei, Smith, Kristina M., Peterson, Matthew, Dekhang, Rigzin, Zhang, Ying, Zucker, Jeremy, Bredeweg, Erin L., Mallappa, Chandrashekara, Zhou, Xiaoying, Lyubetskaya, Anna, Townsend, Jeffrey P., Galagan, James E., Freitag, Michael, Dunlap, Jay C., Bell-Pedersen, Deborah, Sachs, Matthew S.
Publicado 2014

The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion

por Dekhang, Rigzin, Wu, Cheng, Smith, Kristina M., Lamb, Teresa M., Peterson, Matthew, Bredeweg, Erin L., Ibarra, Oneida, Emerson, Jillian M., Karunarathna, Nirmala, Lyubetskaya, Anna, Azizi, Elham, Hurley, Jennifer M., Dunlap, Jay C., Galagan, James E., Freitag, Michael, Sachs, Matthew S., Bell-Pedersen, Deborah
Publicado 2016

Coordinated regulation of acid resistance in Escherichia coli

por Aquino, Patricia, Honda, Brent, Jaini, Suma, Lyubetskaya, Anna, Hosur, Krutika, Chiu, Joanna G., Ekladious, Iriny, Hu, Dongjian, Jin, Lin, Sayeg, Marianna K., Stettner, Arion I., Wang, Julia, Wong, Brandon G., Wong, Winnie S., Alexander, Stephen L., Ba, Cong, Bensussen, Seth I., Bernstein, David B., Braff, Dana, Cha, Susie, Cheng, Daniel I., Cho, Jang Hwan, Chou, Kenny, Chuang, James, Gastler, Daniel E., Grasso, Daniel J., Greifenberger, John S., Guo, Chen, Hawes, Anna K., Israni, Divya V., Jain, Saloni R., Kim, Jessica, Lei, Junyu, Li, Hao, Li, David, Li, Qian, Mancuso, Christopher P., Mao, Ning, Masud, Salwa F., Meisel, Cari L., Mi, Jing, Nykyforchyn, Christine S., Park, Minhee, Peterson, Hannah M., Ramirez, Alfred K., Reynolds, Daniel S., Rim, Nae Gyune, Saffie, Jared C., Su, Hang, Su, Wendell R., Su, Yaqing, Sun, Meng, Thommes, Meghan M., Tu, Tao, Varongchayakul, Nitinun, Wagner, Tyler E., Weinberg, Benjamin H., Yang, Rouhui, Yaroslavsky, Anastasia, Yoon, Christine, Zhao, Yanyu, Zollinger, Alicia J., Stringer, Anne M., Foster, John W., Wade, Joseph, Raman, Sahadaven, Broude, Natasha, Wong, Wilson W., Galagan, James E.
Publicado 2017