Adaptive Metropolis-coupled MCMC for BEAST 2

por Müller, Nicola F., Bouckaert, Remco R.
Publicado 2020

MASCOT: parameter and state inference under the marginal structured coalescent approximation

por Müller, Nicola F, Rasmussen, David, Stadler, Tanja
Publicado 2018

Inferring time-dependent migration and coalescence patterns from genetic sequence and predictor data in structured populations

por Müller, Nicola F, Dudas, Gytis, Stadler, Tanja
Publicado 2019

The Structured Coalescent and Its Approximations

por Müller, Nicola F., Rasmussen, David A., Stadler, Tanja
Publicado 2017

Recombination patterns in coronaviruses

por Müller, Nicola F., Kistler, Kathryn E., Bedford, Trevor
Publicado 2022

A Bayesian approach to infer recombination patterns in coronaviruses

por Müller, Nicola F., Kistler, Kathryn E., Bedford, Trevor
Publicado 2022

Joint Inference of Migration and Reassortment Patterns for Viruses with Segmented Genomes

por Stolz, Ugnė, Stadler, Tanja, Müller, Nicola F, Vaughan, Timothy G
Publicado 2021

State-dependent evolutionary models reveal modes of solid tumour growth

por Lewinsohn, Maya A., Bedford, Trevor, Müller, Nicola F., Feder, Alison F.
Publicado 2023

Regulatory mechanisms underlying coordination of amino acid and glucose catabolism in Escherichia coli

por Zampieri, Mattia, Hörl, Manuel, Hotz, Florian, Müller, Nicola F., Sauer, Uwe
Publicado 2019

Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration

por Yang, Jing, Müller, Nicola F., Bouckaert, Remco, Xu, Bing, Drummond, Alexei J.
Publicado 2019

Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses

por Müller, Nicola F., Stolz, Ugnė, Dudas, Gytis, Stadler, Tanja, Vaughan, Timothy G.
Publicado 2020

Impact and mitigation of sampling bias to determine viral spread: Evaluating discrete phylogeography through CTMC modeling and structured coalescent model approximations

por Layan, Maylis, Müller, Nicola F, Dellicour, Simon, De Maio, Nicola, Bourhy, Hervé, Cauchemez, Simon, Baele, Guy
Publicado 2023

Phylodynamics Uncovers the Transmission of Antibiotic-Resistant Escherichia coli between Canines and Humans in an Urban Environment

por Walas, Nikolina, Müller, Nicola F., Parker, Emily, Henderson, Abigail, Capone, Drew, Brown, Joe, Barker, Troy, Graham, Jay P.
Publicado 2023

Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State

por Moncla, Louise H, Black, Allison, DeBolt, Chas, Lang, Misty, Graff, Nicholas R, Pérez-Osorio, Ailyn C, Müller, Nicola F, Haselow, Dirk, Lindquist, Scott, Bedford, Trevor
Publicado 2021

Phylodynamic analysis of the highly pathogenic avian influenza H5N8 epidemic in France, 2016–2017

por Chakraborty, Debapriyo, Guinat, Claire, Müller, Nicola F., Briand, Francois‐Xavier, Andraud, Mathieu, Scoizec, Axelle, Lebouquin, Sophie, Niqueux, Eric, Schmitz, Audrey, Grasland, Beatrice, Guerin, Jean‐Luc, Paul, Mathilde C., Vergne, Timothée
Publicado 2022

Taming the BEAST—A Community Teaching Material Resource for BEAST 2

por Barido-Sottani, Joëlle, Bošková, Veronika, Plessis, Louis Du, Kühnert, Denise, Magnus, Carsten, Mitov, Venelin, Müller, Nicola F., PečErska, Jūlija, Rasmussen, David A., Zhang, Chi, Drummond, Alexei J., Heath, Tracy A., Pybus, Oliver G., Vaughan, Timothy G., Stadler, Tanja
Publicado 2018

Characterizing the Countrywide Epidemic Spread of Influenza A(H1N1)pdm09 Virus in Kenya between 2009 and 2018

por Owuor, D. Collins, de Laurent, Zaydah R., Kikwai, Gilbert K., Mayieka, Lillian M., Ochieng, Melvin, Müller, Nicola F., Otieno, Nancy A., Emukule, Gideon O., Hunsperger, Elizabeth A., Garten, Rebecca, Barnes, John R., Chaves, Sandra S., Nokes, D. James, Agoti, Charles N.
Publicado 2021

Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics

por Müller, Nicola F., Wüthrich, Daniel, Goldman, Nina, Sailer, Nadine, Saalfrank, Claudia, Brunner, Myrta, Augustin, Noémi, Seth-Smith, Helena MB, Hollenstein, Yvonne, Syedbasha, Mohammedyaseen, Lang, Daniela, Neher, Richard A., Dubuis, Olivier, Naegele, Michael, Buser, Andreas, Nickel, Christian H., Ritz, Nicole, Zeller, Andreas, Lang, Brian M., Hadfield, James, Bedford, Trevor, Battegay, Manuel, Schneider-Sliwa, Rita, Egli, Adrian, Stadler, Tanja
Publicado 2020

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

por Bouckaert, Remco, Vaughan, Timothy G., Barido-Sottani, Joëlle, Duchêne, Sebastián, Fourment, Mathieu, Gavryushkina, Alexandra, Heled, Joseph, Jones, Graham, Kühnert, Denise, De Maio, Nicola, Matschiner, Michael, Mendes, Fábio K., Müller, Nicola F., Ogilvie, Huw A., du Plessis, Louis, Popinga, Alex, Rambaut, Andrew, Rasmussen, David, Siveroni, Igor, Suchard, Marc A., Wu, Chieh-Hsi, Xie, Dong, Zhang, Chi, Stadler, Tanja, Drummond, Alexei J.
Publicado 2019

Local-Scale phylodynamics reveal differential community impact of SARS-CoV-2 in metropolitan US county

por Paredes, Miguel I., Perofsky, Amanda C., Frisbie, Lauren, Moncla, Louise H., Roychoudhury, Pavitra, Xie, Hong, Mohamed Bakhash, Shah A., Kong, Kevin, Arnould, Isabel, Nguyen, Tien V., Wendm, Seffir T., Hajian, Pooneh, Ellis, Sean, Mathias, Patrick C., Greninger, Alexander L., Starita, Lea M., Frazar, Chris D., Ryke, Erica, Zhong, Weizhi, Gamboa, Luis, Threlkeld, Machiko, Lee, Jover, Stone, Jeremy, McDermot, Evan, Truong, Melissa, Shendure, Jay, Oltean, Hanna N., Viboud, Cécile, Chu, Helen, Müller, Nicola F., Bedford, Trevor
Publicado 2022