Large-scale profiling of microRNAs for The Cancer Genome Atlas

por Chu, Andy, Robertson, Gordon, Brooks, Denise, Mungall, Andrew J., Birol, Inanc, Coope, Robin, Ma, Yussanne, Jones, Steven, Marra, Marco A.
Publicado 2016

JAGuaR: Junction Alignments to Genome for RNA-Seq Reads

por Butterfield, Yaron S., Kreitzman, Maayan, Thiessen, Nina, Corbett, Richard D., Li, Yisu, Pang, Johnson, Ma, Yussanne P., Jones, Steven J. M., Birol, İnanç
Publicado 2014

Tumor microRNA profile and prognostic value for lymph node metastasis in oral squamous cell carcinoma patients

por Liu, Kelly Yi Ping, Zhu, Sarah Yuqi, Brooks, Denise, Bowlby, Reanne, Durham, J. Scott, Ma, Yussanne, Moore, Richard A., Mungall, Andrew J., Jones, Steven, Poh, Catherine F.
Publicado 2020

Rare disruptive mutations and their contribution to the heritable risk of colorectal cancer

por Chubb, Daniel, Broderick, Peter, Dobbins, Sara E., Frampton, Matthew, Kinnersley, Ben, Penegar, Steven, Price, Amy, Ma, Yussanne P., Sherborne, Amy L., Palles, Claire, Timofeeva, Maria N., Bishop, D. Timothy, Dunlop, Malcolm G., Tomlinson, Ian, Houlston, Richard S.
Publicado 2016

Application of a Neural Network Whole Transcriptome–Based Pan-Cancer Method for Diagnosis of Primary and Metastatic Cancers

por Grewal, Jasleen K., Tessier-Cloutier, Basile, Jones, Martin, Gakkhar, Sitanshu, Ma, Yussanne, Moore, Richard, Mungall, Andrew J., Zhao, Yongjun, Taylor, Michael D., Gelmon, Karen, Lim, Howard, Renouf, Daniel, Laskin, Janessa, Marra, Marco, Yip, Stephen, Jones, Steven J. M.
Publicado 2019

Clinical outcomes after whole-genome sequencing in patients with metastatic non-small-cell lung cancer

por Tsang, Erica S., Shen, Yaoqing, Chooback, Negar, Ho, Cheryl, Jones, Martin, Renouf, Daniel J., Lim, Howard, Sun, Sophie, Yip, Stephen, Pleasance, Erin, Ionescu, Diana N., Mungall, Karen, Kasaian, Katayoon, Ma, Yussanne, Zhao, Yongjun, Mungall, Andrew, Moore, Richard, Jones, Steven J.M., Marra, Marco, Laskin, Janessa
Publicado 2019

Allelic Variation at the 8q23.3 Colorectal Cancer Risk Locus Functions as a Cis-Acting Regulator of EIF3H

por Pittman, Alan M., Naranjo, Silvia, Jalava, Sanni E., Twiss, Philip, Ma, Yussanne, Olver, Bianca, Lloyd, Amy, Vijayakrishnan, Jayaram, Qureshi, Mobshra, Broderick, Peter, van Wezel, Tom, Morreau, Hans, Tuupanen, Sari, Aaltonen, Lauri A., Alonso, M. Eva, Manzanares, Miguel, Gavilán, Angela, Visakorpi, Tapio, Gómez-Skarmeta, José Luis, Houlston, Richard S.
Publicado 2010

Personalized oncogenomic analysis of metastatic adenoid cystic carcinoma: using whole-genome sequencing to inform clinical decision-making

por Chahal, Manik, Pleasance, Erin, Grewal, Jasleen, Zhao, Eric, Ng, Tony, Chapman, Erin, Jones, Martin R., Shen, Yaoqing, Mungall, Karen L., Bonakdar, Melika, Taylor, Gregory A., Ma, Yussanne, Mungall, Andrew J., Moore, Richard A., Lim, Howard, Renouf, Daniel, Yip, Stephen, Jones, Steven J.M., Marra, Marco A., Laskin, Janessa
Publicado 2018

Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing

por Haile, Simon, Corbett, Richard D., MacLeod, Tina, Bilobram, Steve, Smailus, Duane, Tsao, Philip, Kirk, Heather, McDonald, Helen, Pandoh, Pawan, Bala, Miruna, Hirst, Martin, Miller, Diane, Moore, Richard A., Mungall, Andrew J., Schein, Jacquie, Coope, Robin J., Ma, Yussanne, Zhao, Yongjun, Holt, Rob A., Jones, Steven J., Marra, Marco A.
Publicado 2017

MicroRNA Expression-Based Model Indicates Event-Free Survival in Pediatric Acute Myeloid Leukemia

por Lim, Emilia L., Trinh, Diane L., Ries, Rhonda E., Wang, Jim, Gerbing, Robert B., Ma, Yussanne, Topham, James, Hughes, Maya, Pleasance, Erin, Mungall, Andrew J., Moore, Richard, Zhao, Yongjun, Aplenc, Richard, Sung, Lillian, Kolb, E. Anders, Gamis, Alan, Smith, Malcolm, Gerhard, Daniela S., Alonzo, Todd A., Meshinchi, Soheil, Marra, Marco A.
Publicado 2017

Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples

por Haile, Simon, Corbett, Richard D, Bilobram, Steve, Bye, Morgan H, Kirk, Heather, Pandoh, Pawan, Trinh, Eva, MacLeod, Tina, McDonald, Helen, Bala, Miruna, Miller, Diane, Novik, Karen, Coope, Robin J, Moore, Richard A, Zhao, Yongjun, Mungall, Andrew J, Ma, Yussanne, Holt, Rob A, Jones, Steven J, Marra, Marco A
Publicado 2019

A somatic reference standard for cancer genome sequencing

por Craig, David W., Nasser, Sara, Corbett, Richard, Chan, Simon K., Murray, Lisa, Legendre, Christophe, Tembe, Waibhav, Adkins, Jonathan, Kim, Nancy, Wong, Shukmei, Baker, Angela, Enriquez, Daniel, Pond, Stephanie, Pleasance, Erin, Mungall, Andrew J., Moore, Richard A., McDaniel, Timothy, Ma, Yussanne, Jones, Steven J. M., Marra, Marco A., Carpten, John D., Liang, Winnie S.
Publicado 2016

Whole genome and whole transcriptome genomic profiling of a metastatic eccrine porocarcinoma

por Thibodeau, My Linh, Bonakdar, Melika, Zhao, Eric, Mungall, Karen L., Reisle, Caralyn, Zhang, Wei, Bye, Morgan H., Thiessen, Nina, Bleile, Dustin, Mungall, Andrew J., Ma, Yussanne P., Jones, Martin R., Renouf, Daniel J., Lim, Howard J., Yip, Stephen, Ng, Tony, Ho, Cheryl, Laskin, Janessa, Marra, Marco A., Schrader, Kasmintan A., Jones, Steven J. M.
Publicado 2018

Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis

por Haile, Simon, Pandoh, Pawan, McDonald, Helen, Corbett, Richard D., Tsao, Philip, Kirk, Heather, MacLeod, Tina, Jones, Martin, Bilobram, Steve, Brooks, Denise, Smailus, Duane, Steidl, Christian, Scott, David W., Bala, Miruna, Hirst, Martin, Miller, Diane, Moore, Richard A., Mungall, Andrew J., Coope, Robin J., Ma, Yussanne, Zhao, Yongjun, Holt, Rob A., Jones, Steven J., Marra, Marco A.
Publicado 2017

The Genome of the Northern Sea Otter (Enhydra lutris kenyoni)

por Jones, Samantha J., Haulena, Martin, Taylor, Gregory A., Chan, Simon, Bilobram, Steven, Warren, René L., Hammond, S. Austin, Mungall, Karen L., Choo, Caleb, Kirk, Heather, Pandoh, Pawan, Ally, Adrian, Dhalla, Noreen, Tam, Angela K. Y., Troussard, Armelle, Paulino, Daniel, Coope, Robin J. N., Mungall, Andrew J., Moore, Richard, Zhao, Yongjun, Birol, Inanc, Ma, Yussanne, Marra, Marco, Jones, Steven J. M.
Publicado 2017

Common variation at 10p12.31 near MLLT10 influences meningioma risk

por Dobbins, Sara E, Broderick, Peter, Melin, Beatrice, Feychting, Maria, Johansen, Christoffer, Andersson, Ulrika, Brännström, Thomas, Schramm, Johannes, Olver, Bianca, Lloyd, Amy, Ma, Yussanne P, Hosking, Fay J, Lönn, Stefan, Ahlbom, Anders, Henriksson, Roger, Schoemaker, Minouk J, Hepworth, Sarah J, Hoffmann, Per, Mühleisen, Thomas W, Nöthen, Markus M, Moebus, Susanne, Eisele, Lewin, Kosteljanetz, Michael, Muir, Kenneth, Swerdlow, Anthony, Simon, Matthias, Houlston, Richard S
Publicado 2011

Genomic profiling of pelvic genital type leiomyosarcoma in a woman with a germline CHEK2:c.1100delC mutation and a concomitant diagnosis of metastatic invasive ductal breast carcin...

por Thibodeau, My Linh, Reisle, Caralyn, Zhao, Eric, Martin, Lee Ann, Alwelaie, Yazeed, Mungall, Karen L., Ch'ng, Carolyn, Thomas, Ruth, Ng, Tony, Yip, Stephen, J. Lim, Howard, Sun, Sophie, Young, Sean S., Karsan, Aly, Zhao, Yongjun, Mungall, Andrew J., Moore, Richard A., J. Renouf, Daniel, Gelmon, Karen, Ma, Yussanne P., Hayes, Malcolm, Laskin, Janessa, Marra, Marco A., Schrader, Kasmintan A., Jones, Steven J. M.
Publicado 2017

Corrigendum: Genomic profiling of pelvic genital type leiomyosarcoma in a woman with a germline CHEK2:c.1100delC mutation and a concomitant diagnosis of metastatic invasive ductal...

por Thibodeau, My Linh, Reisle, Caralyn, Zhao, Eric, Martin, Lee Ann, Alwelaie, Yazeed, Mungall, Karen L., Ch'ng, Carolyn, Thomas, Ruth, Ng, Tony, Yip, Stephen, Lim, Howard, Sun, Sophie, Young, Sean S., Karsan, Aly, Zhao, Yongjun, Mungall, Andrew J., Moore, Richard A., Renouf, Daniel, Gelmon, Karen, Ma, Yussanne P., Hayes, Malcolm, Laskin, Janessa, Marra, Marco A., Schrader, Kasmintan A., Jones, Steven J.M.
Publicado 2018

High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma

por Johnston, Michael J., Nikolic, Ana, Ninkovic, Nicoletta, Guilhamon, Paul, Cavalli, Florence M.G., Seaman, Steven, Zemp, Franz J., Lee, John, Abdelkareem, Aly, Ellestad, Katrina, Murison, Alex, Kushida, Michelle M., Coutinho, Fiona J., Ma, Yussanne, Mungall, Andrew J., Moore, Richard, Marra, Marco A., Taylor, Michael D., Dirks, Peter B., Pugh, Trevor J., Morrissy, Sorana, St Croix, Bradley, Mahoney, Douglas J., Lupien, Mathieu, Gallo, Marco
Publicado 2019

Comparative RNA-Sequencing Analysis Benefits a Pediatric Patient With Relapsed Cancer

por Newton, Yulia, Rassekh, S. Rod, Deyell, Rebecca J., Shen, Yaoqing, Jones, Martin R., Dunham, Chris, Yip, Stephen, Leelakumari, Sreeja, Zhu, Jingchun, McColl, Duncan, Swatloski, Teresa, Salama, Sofie R., Ng, Tony, Hendson, Glenda, Lee, Anna F., Ma, Yussanne, Moore, Richard, Mungall, Andrew J., Haussler, David, Stuart, Joshua M., Jantzen, Colleen, Laskin, Janessa, Jones, Steven J.M., Marra, Marco A., Morozova, Olena
Publicado 2018