CytoPacq: a web-interface for simulating multi-dimensional cell imaging

por Wiesner, David, Svoboda, David, Maška, Martin, Kozubek, Michal
Publicado 2019

Cell Tracking Accuracy Measurement Based on Comparison of Acyclic Oriented Graphs

por Matula, Pavel, Maška, Martin, Sorokin, Dmitry V., Matula, Petr, Ortiz-de-Solórzano, Carlos, Kozubek, Michal
Publicado 2015

Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images

por Gómez-de-Mariscal, Estibaliz, Maška, Martin, Kotrbová, Anna, Pospíchalová, Vendula, Matula, Pavel, Muñoz-Barrutia, Arrate
Publicado 2019

TEM ExosomeAnalyzer: a computer-assisted software tool for quantitative evaluation of extracellular vesicles in transmission electron microscopy images

por Kotrbová, Anna, Štěpka, Karel, Maška, Martin, Pálenik, Jakub Jozef, Ilkovics, Ladislav, Klemová, Dobromila, Kravec, Marek, Hubatka, František, Dave, Zankruti, Hampl, Aleš, Bryja, Vítězslav, Matula, Pavel, Pospíchalová, Vendula
Publicado 2019

Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis

por Anguiano, María, Castilla, Carlos, Maška, Martin, Ederra, Cristina, Peláez, Rafael, Morales, Xabier, Muñoz-Arrieta, Gorka, Mujika, Maite, Kozubek, Michal, Muñoz-Barrutia, Arrate, Rouzaut, Ana, Arana, Sergio, Garcia-Aznar, José Manuel, Ortiz-de-Solorzano, Carlos
Publicado 2017

BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows

por Rubens, Ulysse, Mormont, Romain, Paavolainen, Lassi, Bäcker, Volker, Pavie, Benjamin, Scholz, Leandro A., Michiels, Gino, Maška, Martin, Ünay, Devrim, Ball, Graeme, Hoyoux, Renaud, Vandaele, Rémy, Golani, Ofra, Stanciu, Stefan G., Sladoje, Natasa, Paul-Gilloteaux, Perrine, Marée, Raphaël, Tosi, Sébastien
Publicado 2020

A benchmark for comparison of cell tracking algorithms

por Maška, Martin, Ulman, Vladimír, Svoboda, David, Matula, Pavel, Matula, Petr, Ederra, Cristina, Urbiola, Ainhoa, España, Tomás, Venkatesan, Subramanian, Balak, Deepak M.W., Karas, Pavel, Bolcková, Tereza, Štreitová, Markéta, Carthel, Craig, Coraluppi, Stefano, Harder, Nathalie, Rohr, Karl, Magnusson, Klas E. G., Jaldén, Joakim, Blau, Helen M., Dzyubachyk, Oleh, Křížek, Pavel, Hagen, Guy M., Pastor-Escuredo, David, Jimenez-Carretero, Daniel, Ledesma-Carbayo, Maria J., Muñoz-Barrutia, Arrate, Meijering, Erik, Kozubek, Michal, Ortiz-de-Solorzano, Carlos
Publicado 2014

Objective comparison of particle tracking methods

por Chenouard, Nicolas, Smal, Ihor, de Chaumont, Fabrice, Maška, Martin, Sbalzarini, Ivo F, Gong, Yuanhao, Cardinale, Janick, Carthel, Craig, Coraluppi, Stefano, Winter, Mark, Cohen, Andrew R, Godinez, William J, Rohr, Karl, Kalaidzidis, Yannis, Liang, Liang, Duncan, James, Shen, Hongying, Xu, Yingke, Magnusson, Klas E G, Jaldén, Joakim, Blau, Helen M, Paul-Gilloteaux, Perrine, Roudot, Philippe, Kervrann, Charles, Waharte, François, Tinevez, Jean-Yves, Shorte, Spencer L, Willemse, Joost, Celler, Katherine, van Wezel, Gilles P, Dan, Han-Wei, Tsai, Yuh-Show, de Solórzano, Carlos Ortiz, Olivo-Marin, Jean-Christophe, Meijering, Erik
Publicado 2014

An Objective Comparison of Cell Tracking Algorithms

por Ulman, Vladimír, Maška, Martin, Magnusson, Klas E. G., Ronneberger, Olaf, Haubold, Carsten, Harder, Nathalie, Matula, Pavel, Matula, Petr, Svoboda, David, Radojevic, Miroslav, Smal, Ihor, Rohr, Karl, Jaldén, Joakim, Blau, Helen M., Dzyubachyk, Oleh, Lelieveldt, Boudewijn, Xiao, Pengdong, Li, Yuexiang, Cho, Siu-Yeung, Dufour, Alexandre C., Olivo-Marin, Jean-Christophe, Reyes-Aldasoro, Constantino C., Solis-Lemus, Jose A., Bensch, Robert, Brox, Thomas, Stegmaier, Johannes, Mikut, Ralf, Wolf, Steffen, Hamprecht, Fred. A., Esteves, Tiago, Quelhas, Pedro, Demirel, Ömer, Malmström, Lars, Jug, Florian, Tomancak, Pavel, Meijering, Erik, Muñoz-Barrutia, Arrate, Kozubek, Michal, Ortiz-de-Solorzano, Carlos
Publicado 2017

The Cell Tracking Challenge: 10 years of objective benchmarking

por Maška, Martin, Ulman, Vladimír, Delgado-Rodriguez, Pablo, Gómez-de-Mariscal, Estibaliz, Nečasová, Tereza, Guerrero Peña, Fidel A., Ren, Tsang Ing, Meyerowitz, Elliot M., Scherr, Tim, Löffler, Katharina, Mikut, Ralf, Guo, Tianqi, Wang, Yin, Allebach, Jan P., Bao, Rina, Al-Shakarji, Noor M., Rahmon, Gani, Toubal, Imad Eddine, Palaniappan, Kannappan, Lux, Filip, Matula, Petr, Sugawara, Ko, Magnusson, Klas E. G., Aho, Layton, Cohen, Andrew R., Arbelle, Assaf, Ben-Haim, Tal, Raviv, Tammy Riklin, Isensee, Fabian, Jäger, Paul F., Maier-Hein, Klaus H., Zhu, Yanming, Ederra, Cristina, Urbiola, Ainhoa, Meijering, Erik, Cunha, Alexandre, Muñoz-Barrutia, Arrate, Kozubek, Michal, Ortiz-de-Solórzano, Carlos
Publicado 2023