No evidence for distinct types in the evolution of SARS-CoV-2

por MacLean, Oscar A, Orton, Richard J, Singer, Joshua B, Robertson, David L
Publicado 2020

Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen

por MacLean, Oscar A., Lytras, Spyros, Weaver, Steven, Singer, Joshua B., Boni, Maciej F., Lemey, Philippe, Kosakovsky Pond, Sergei L., Robertson, David L.
Publicado 2021

Adaptive Evolution of RH5 in Ape Plasmodium species of the Laverania Subgenus

por Plenderleith, Lindsey J., Liu, Weimin, MacLean, Oscar A., Li, Yingying, Loy, Dorothy E., Sundararaman, Sesh A., Bibollet-Ruche, Frederic, Learn, Gerald H., Hahn, Beatrice H., Sharp, Paul M.
Publicado 2018

Reply to Forni et al., “Multiple Selected Changes May Modulate the Molecular Interaction between Laverania RH5 and Primate Basigin”

por Plenderleith, Lindsey J., Liu, Weimin, MacLean, Oscar A., Li, Yingying, Loy, Dorothy E., Sundararaman, Sesh A., Bibollet-Ruche, Frederic, Learn, Gerald H., Hahn, Beatrice H., Sharp, Paul M.
Publicado 2018

Conserved recombination patterns across coronavirus subgenera

por de Klerk, Arné, Swanepoel, Phillip, Lourens, Rentia, Zondo, Mpumelelo, Abodunran, Isaac, Lytras, Spyros, MacLean, Oscar A, Robertson, David, Kosakovsky Pond, Sergei L, Zehr, Jordan D, Kumar, Venkatesh, Stanhope, Michael J, Harkins, Gordon, Murrell, Ben, Martin, Darren P
Publicado 2022

In vitro selection of Remdesivir resistance suggests evolutionary predictability of SARS-CoV-2

por Szemiel, Agnieszka M., Merits, Andres, Orton, Richard J., MacLean, Oscar A., Pinto, Rute Maria, Wickenhagen, Arthur, Lieber, Gauthier, Turnbull, Matthew L., Wang, Sainan, Furnon, Wilhelm, Suarez, Nicolas M., Mair, Daniel, da Silva Filipe, Ana, Willett, Brian J., Wilson, Sam J., Patel, Arvind H., Thomson, Emma C., Palmarini, Massimo, Kohl, Alain, Stewart, Meredith E.
Publicado 2021

The emergence and ongoing convergent evolution of the N501Y lineages coincides with a major global shift in the SARS-CoV-2 selective landscape

por Martin, Darren P, Weaver, Steven, Tegally, Houryiah, San, Emmanuel James, Shank, Stephen D, Wilkinson, Eduan, Lucaci, Alexander G, Giandhari, Jennifer, Naidoo, Sureshnee, Pillay, Yeshnee, Singh, Lavanya, Lessells, Richard J, Gupta, Ravindra K, Wertheim, Joel O, Nekturenko, Anton, Murrell, Ben, Harkins, Gordon W, Lemey, Philippe, MacLean, Oscar A, Robertson, David L, de Oliveira, Tulio, Kosakovsky Pond, Sergei L
Publicado 2021

The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages

por Martin, Darren P., Weaver, Steven, Tegally, Houriiyah, San, James Emmanuel, Shank, Stephen D., Wilkinson, Eduan, Lucaci, Alexander G., Giandhari, Jennifer, Naidoo, Sureshnee, Pillay, Yeshnee, Singh, Lavanya, Lessells, Richard J., Gupta, Ravindra K., Wertheim, Joel O., Nekturenko, Anton, Murrell, Ben, Harkins, Gordon W., Lemey, Philippe, MacLean, Oscar A., Robertson, David L., de Oliveira, Tulio, Kosakovsky Pond, Sergei L.
Publicado 2021

Evolutionary history of human Plasmodium vivax revealed by genome-wide analyses of related ape parasites

por Loy, Dorothy E., Plenderleith, Lindsey J., Sundararaman, Sesh A., Liu, Weimin, Gruszczyk, Jakub, Chen, Yi-Jun, Trimboli, Stephanie, Learn, Gerald H., MacLean, Oscar A., Morgan, Alex L. K., Li, Yingying, Avitto, Alexa N., Giles, Jasmin, Calvignac-Spencer, Sébastien, Sachse, Andreas, Leendertz, Fabian H., Speede, Sheri, Ayouba, Ahidjo, Peeters, Martine, Rayner, Julian C., Tham, Wai-Hong, Sharp, Paul M., Hahn, Beatrice H.
Publicado 2018

SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

por Willett, Brian J., Grove, Joe, MacLean, Oscar A., Wilkie, Craig, De Lorenzo, Giuditta, Furnon, Wilhelm, Cantoni, Diego, Scott, Sam, Logan, Nicola, Ashraf, Shirin, Manali, Maria, Szemiel, Agnieszka, Cowton, Vanessa, Vink, Elen, Harvey, William T., Davis, Chris, Asamaphan, Patawee, Smollett, Katherine, Tong, Lily, Orton, Richard, Hughes, Joseph, Holland, Poppy, Silva, Vanessa, Pascall, David J., Puxty, Kathryn, da Silva Filipe, Ana, Yebra, Gonzalo, Shaaban, Sharif, Holden, Matthew T. G., Pinto, Rute Maria, Gunson, Rory, Templeton, Kate, Murcia, Pablo R., Patel, Arvind H., Klenerman, Paul, Dunachie, Susanna, Haughney, John, Robertson, David L., Palmarini, Massimo, Ray, Surajit, Thomson, Emma C.
Publicado 2022

Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

por Willett, Brian J., Grove, Joe, MacLean, Oscar A., Wilkie, Craig, De Lorenzo, Giuditta, Furnon, Wilhelm, Cantoni, Diego, Scott, Sam, Logan, Nicola, Ashraf, Shirin, Manali, Maria, Szemiel, Agnieszka, Cowton, Vanessa, Vink, Elen, Harvey, William T., Davis, Chris, Asamaphan, Patawee, Smollett, Katherine, Tong, Lily, Orton, Richard, Hughes, Joseph, Holland, Poppy, Silva, Vanessa, Pascall, David J., Puxty, Kathryn, da Silva Filipe, Ana, Yebra, Gonzalo, Shaaban, Sharif, Holden, Matthew T. G., Pinto, Rute Maria, Gunson, Rory, Templeton, Kate, Murcia, Pablo R., Patel, Arvind H., Klenerman, Paul, Dunachie, Susanna, Haughney, John, Robertson, David L., Palmarini, Massimo, Ray, Surajit, Thomson, Emma C.
Publicado 2022

Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function

por Martin, Darren P, Lytras, Spyros, Lucaci, Alexander G, Maier, Wolfgang, Grüning, Björn, Shank, Stephen D, Weaver, Steven, MacLean, Oscar A, Orton, Richard J, Lemey, Philippe, Boni, Maciej F, Tegally, Houriiyah, Harkins, Gordon, Scheepers, Cathrine, Bhiman, Jinal N, Everatt, Josie, Amoako, Daniel G, San, James Emmanuel, Giandhari, Jennifer, Sigal, Alex, Williamson, Carolyn, Hsiao, Nei-yuan, von Gottberg, Anne, De Klerk, Arne, Shafer, Robert W, Robertson, David L, Wilkinson, Robert J, Sewell, B Trevor, Lessells, Richard, Nekrutenko, Anton, Greaney, Allison J., Starr, Tyler N., Bloom, Jesse D., Murrell, Ben, Wilkinson, Eduan, Gupta, Ravindra K, de Oliveira, Tulio, Kosakovsky Pond, Sergei L
Publicado 2022

Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function

por Martin, Darren P., Lytras, Spyros, Lucaci, Alexander G., Maier, Wolfgang, Grüning, Björn, Shank, Stephen D., Weaver, Steven, MacLean, Oscar A., Orton, Richard J., Lemey, Philippe, Boni, Maciej F., Tegally, Houriiyah, Harkins, Gordon W., Scheepers, Cathrine, Bhiman, Jinal N., Everatt, Josie, Amoako, Daniel G., San, James Emmanuel, Giandhari, Jennifer, Sigal, Alex, Williamson, Carolyn, Hsiao, Nei-yuan, von Gottberg, Anne, De Klerk, Arne, Shafer, Robert W., Robertson, David L., Wilkinson, Robert J., Sewell, B. Trevor, Lessells, Richard, Nekrutenko, Anton, Greaney, Allison J., Starr, Tyler N., Bloom, Jesse D., Murrell, Ben, Wilkinson, Eduan, Gupta, Ravindra K., de Oliveira, Tulio, Kosakovsky Pond, Sergei L.
Publicado 2022