Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types

por Meng, Nan, Machiraju, Raghu, Huang, Kun
Publicado 2016

Improving Compound Activity Classification via Deep Transfer and Representation Learning

por Dey, Vishal, Machiraju, Raghu, Ning, Xia
Publicado 2022

iGPSe: A visual analytic system for integrative genomic based cancer patient stratification

por Ding, Hao, Wang, Chao, Huang, Kun, Machiraju, Raghu
Publicado 2014

GRAPHIE: graph based histology image explorer

por Ding, Hao, Wang, Chao, Huang, Kun, Machiraju, Raghu
Publicado 2015

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements

por Eicher, Tara, Chan, Jany, Luu, Han, Machiraju, Raghu, Mathé, Ewy A.
Publicado 2021

A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data

por Han, Zhi, Tian, Lu, Pécot, Thierry, Huang, Tim, Machiraju, Raghu, Huang, Kun
Publicado 2012

Predictive Modeling for Pressure Ulcers from Intensive Care Unit Electronic Health Records

por Kaewprag, Pacharmon, Newton, Cheryl, Vermillion, Brenda, Hyun, Sookyung, Huang, Kun, Machiraju, Raghu
Publicado 2015

Predictive models for pressure ulcers from intensive care unit electronic health records using Bayesian networks

por Kaewprag, Pacharmon, Newton, Cheryl, Vermillion, Brenda, Hyun, Sookyung, Huang, Kun, Machiraju, Raghu
Publicado 2017

Imitating Pathologist Based Assessment With Interpretable and Context Based Neural Network Modeling of Histology Images

por Srivastava, Arunima, Kulkarni, Chaitanya, Huang, Kun, Parwani, Anil, Mallick, Parag, Machiraju, Raghu
Publicado 2018

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge

por Eicher, Tara, Patt, Andrew, Kautto, Esko, Machiraju, Raghu, Mathé, Ewy, Zhang, Yan
Publicado 2019

Effectively processing medical term queries on the UMLS Metathesaurus by layered dynamic programming

por Ren, Kaiyu, Lai, Albert M, Mukhopadhyay, Aveek, Machiraju, Raghu, Huang, Kun, Xiang, Yang
Publicado 2014

Identifying survival associated morphological features of triple negative breast cancer using multiple datasets

por Wang, Chao, Pécot, Thierry, Zynger, Debra L, Machiraju, Raghu, Shapiro, Charles L, Huang, Kun
Publicado 2013

Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes

por Wang, Jie, Xia, Shuli, Arand, Brian, Zhu, Heng, Machiraju, Raghu, Huang, Kun, Ji, Hongkai, Qian, Jiang
Publicado 2016

Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources

por Eicher, Tara, Kinnebrew, Garrett, Patt, Andrew, Spencer, Kyle, Ying, Kevin, Ma, Qin, Machiraju, Raghu, Mathé, Ewy A.
Publicado 2020

Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility

por Srivastava, Arunima, Adusumilli, Ravali, Boyce, Hunter, Garijo, Daniel, Ratnakar, Varun, Mayani, Rajiv, Yu, Thomas, Machiraju, Raghu, Gil, Yolanda, Mallick, Parag
Publicado 2019

Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing

por Johnson, Travis S., Xiang, Shunian, Helm, Bryan R., Abrams, Zachary B., Neidecker, Peter, Machiraju, Raghu, Zhang, Yan, Huang, Kun, Zhang, Jie
Publicado 2020

Understanding the sequence requirements of protein families: insights from the BioVis 2013 contests

por Ray, William C, Rumpf, R Wolfgang, Sullivan, Brandon, Callahan, Nicholas, Magliery, Thomas, Machiraju, Raghu, Wong, Bang, Krzywinski, Martin, Bartlett, Christopher W
Publicado 2014

Actin Grips: Circular Actin-Rich Cytoskeletal Structures that Mediate the Wrapping of Polymeric Microfibers by Endothelial Cells

por Jones, Desiree, Park, DoYoung, Anghelina, Mirela, Pecot, Thierry, Machiraju, Raghu, Xue, Ruipeng, Lannutti, John, Thomas, Jessica, Cole, Sara, Moldovan, Leni, Moldovan, Nicanor I.
Publicado 2015

Redeployment of Myc and E2f1-3 drives Rb deficient cell cycles

por Liu, Huayang, Tang, Xing, Srivastava, Arunima, Pécot, Thierry, Daniel, Piotr, Hemmelgarn, Benjamin, Reyes, Stephan, Fackler, Nicholas, Bajwa, Amneet, Kladney, Raleigh, Koivisto, Christopher, Chen, Zhong, Wang, Qianben, Huang, Kun, Machiraju, Raghu, Sáenz-Robles, Maria Teresa, Cantalupo, Paul, Pipas, James M., Leone, Gustavo
Publicado 2015

Canonical and Atypical E2Fs Regulate the Mammalian Endocycle

por Chen, Hui-Zi, Ouseph, Madhu M., Li, Jing, Pécot, Thierry, Chokshi, Veda, Kent, Lindsey, Bae, Sooin, Byrne, Morgan, Duran, Camille, Comstock, Grant, Trikha, Prashant, Mair, Markus, Senapati, Shantibhusan, Martin, Chelsea K., Gandhi, Sagar, Wilson, Nicholas, Liu, Bin, Huang, Yi-Wen, Thompson, John C., Raman, Sundaresan, Singh, Shantanu, Leone, Marcelo, Machiraju, Raghu, Huang, Kun, Mo, Xiaokui, Fernandez, Soledad, Kalaszczynska, Ilona, Wolgemuth, Debra J., Sicinski, Piotr, Huang, Tim, Jin, Victor, Leone, Gustavo
Publicado 2012