Microbiome Datasets Are Compositional: And This Is Not Optional

por Gloor, Gregory B., Macklaim, Jean M., Pawlowsky-Glahn, Vera, Egozcue, Juan J.
Publicado 2017

omicplotR: visualizing omic datasets as compositions

por Giguere, Daniel J., Macklaim, Jean M., Lieng, Brandon Y., Gloor, Gregory B.
Publicado 2019

Changes in vaginal microbiota following antimicrobial and probiotic therapy

por Macklaim, Jean M., Clemente, Jose C., Knight, Rob, Gloor, Gregory B., Reid, Gregor
Publicado 2015

ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq

por Fernandes, Andrew D., Macklaim, Jean M., Linn, Thomas G., Reid, Gregor, Gloor, Gregory B.
Publicado 2013

The Skin Microbiome: Current Techniques, Challenges, and Future Directions

por Santiago-Rodriguez, Tasha M., Le François, Brice, Macklaim, Jean M., Doukhanine, Evgueni, Hollister, Emily B.
Publicado 2023

Pilot assessment of probiotics for pregnant women in Rwanda

por McMillan, Amy, Rulisa, Stephen, Gloor, Gregory B., Macklaim, Jean M., Sumarah, Mark, Reid, Gregor
Publicado 2018

Deep Sequencing of the Vaginal Microbiota of Women with HIV

por Hummelen, Ruben, Fernandes, Andrew D., Macklaim, Jean M., Dickson, Russell J., Changalucha, John, Gloor, Gregory B., Reid, Gregor
Publicado 2010

Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis

por Macklaim, Jean M, Fernandes, Andrew D, Di Bella, Julia M, Hammond, Jo-Anne, Reid, Gregor, Gloor, Gregory B
Publicado 2013

Streptococcus salivarius inhibits immune activation by periodontal disease pathogens

por MacDonald, Kyle W., Chanyi, Ryan M., Macklaim, Jean M., Cadieux, Peter A., Reid, Gregor, Burton, Jeremy P.
Publicado 2021

Microbiome Profiling by Illumina Sequencing of Combinatorial Sequence-Tagged PCR Products

por Gloor, Gregory B., Hummelen, Ruben, Macklaim, Jean M., Dickson, Russell J., Fernandes, Andrew D., MacPhee, Roderick, Reid, Gregor
Publicado 2010

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

por Fernandes, Andrew D, Reid, Jennifer NS, Macklaim, Jean M, McMurrough, Thomas A, Edgell, David R, Gloor, Gregory B
Publicado 2014

Comparative Genomic and Phenotypic Analysis of the Vaginal Probiotic Lactobacillus rhamnosus GR-1

por Petrova, Mariya I., Macklaim, Jean M., Wuyts, Sander, Verhoeven, Tine, Vanderleyden, Jos, Gloor, Gregory B., Lebeer, Sarah, Reid, Gregor
Publicado 2018

A multi-platform metabolomics approach identifies highly specific biomarkers of bacterial diversity in the vagina of pregnant and non-pregnant women

por McMillan, Amy, Rulisa, Stephen, Sumarah, Mark, Macklaim, Jean M., Renaud, Justin, Bisanz, Jordan E., Gloor, Gregory B., Reid, Gregor
Publicado 2015

The lectin-like protein 1 in Lactobacillus rhamnosus GR-1 mediates tissue-specific adherence to vaginal epithelium and inhibits urogenital pathogens

por Petrova, Mariya I., Lievens, Elke, Verhoeven, Tine L. A., Macklaim, Jean M., Gloor, Gregory, Schols, Dominique, Vanderleyden, Jos, Reid, Gregor, Lebeer, Sarah
Publicado 2016

Vaginal Microbiome and Epithelial Gene Array in Post-Menopausal Women with Moderate to Severe Dryness

por Hummelen, Ruben, Macklaim, Jean M., Bisanz, Jordan E., Hammond, Jo-Anne, McMillan, Amy, Vongsa, Rebecca, Koenig, David, Gloor, Gregory B., Reid, Gregor
Publicado 2011

Genome Sequence of Lactobacillus pentosus KCA1: Vaginal Isolate from a Healthy Premenopausal Woman

por Anukam, Kingsley C., Macklaim, Jean M., Gloor, Gregory B., Reid, Gregor, Boekhorst, Jos, Renckens, Bernadet, van Hijum, Sacha A. F. T., Siezen, Roland J.
Publicado 2013

Subinhibitory Antibiotic Therapy Alters Recurrent Urinary Tract Infection Pathogenesis through Modulation of Bacterial Virulence and Host Immunity

por Goneau, Lee W., Hannan, Thomas J., MacPhee, Roderick A., Schwartz, Drew J., Macklaim, Jean M., Gloor, Gregory B., Razvi, Hassan, Reid, Gregor, Hultgren, Scott J., Burton, Jeremy P.
Publicado 2015

Persistence of the Oral Probiotic Streptococcus salivarius M18 Is Dose Dependent and Megaplasmid Transfer Can Augment Their Bacteriocin Production and Adhesion Characteristics

por Burton, Jeremy P., Wescombe, Philip A., Macklaim, Jean M., Chai, Melissa H. C., MacDonald, Kyle, Hale, John D. F., Tagg, John, Reid, Gregor, Gloor, Gregory B., Cadieux, Peter A.
Publicado 2013

Rational probe design for efficient rRNA depletion and improved metatranscriptomic analysis of human microbiomes

por Tan, Asako, Murugapiran, Senthil, Mikalauskas, Alaya, Koble, Jeff, Kennedy, Drew, Hyde, Fred, Ruotti, Victor, Law, Emily, Jensen, Jordan, Schroth, Gary P., Macklaim, Jean M., Kuersten, Scott, LeFrançois, Brice, Gohl, Daryl M.
Publicado 2023