Pathway-Based Drug Response Prediction Using Similarity Identification in Gene Expression

por Madani Tonekaboni, Seyed Ali, Beri, Gangesh, Haibe-Kains, Benjamin
Publicado 2020

Large organized chromatin lysine domains help distinguish primitive from differentiated cell populations

por Madani Tonekaboni, Seyed Ali, Haibe-Kains, Benjamin, Lupien, Mathieu
Publicado 2021

Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks

por Madani Tonekaboni, Seyed Ali, Mazrooei, Parisa, Kofia, Victor, Haibe-Kains, Benjamin, Lupien, Mathieu
Publicado 2019

SYNERGxDB: an integrative pharmacogenomic portal to identify synergistic drug combinations for precision oncology

por Seo, Heewon, Tkachuk, Denis, Ho, Chantal, Mammoliti, Anthony, Rezaie, Aria, Madani Tonekaboni, Seyed Ali, Haibe-Kains, Benjamin
Publicado 2020

Mathematical modelling of phenotypic plasticity and conversion to a stem-cell state under hypoxia

por Dhawan, Andrew, Madani Tonekaboni, Seyed Ali, Taube, Joseph H., Hu, Stephen, Sphyris, Nathalie, Mani, Sendurai A., Kohandel, Mohammad
Publicado 2016

Biased Deep Learning Methods in Detection of COVID-19 Using CT Images: A Challenge Mounted by Subject-Wise-Split ISFCT Dataset

por Parsarad, Shiva, Saeedizadeh, Narges, Soufi, Ghazaleh Jamalipour, Shafieyoon, Shamim, Hekmatnia, Farzaneh, Zarei, Andrew Parviz, Soleimany, Samira, Yousefi, Amir, Nazari, Hengameh, Torabi, Pegah, S. Milani, Abbas, Madani Tonekaboni, Seyed Ali, Rabbani, Hossein, Hekmatnia, Ali, Kafieh, Rahele
Publicado 2023

A primary hierarchically organized patient-derived model enables in depth interrogation of stemness driven by the coding and non-coding genome

por Boutzen, Héléna, Madani Tonekaboni, Seyed Ali, Chan-Seng-Yue, Michelle, Murison, Alex, Takayama, Naoya, Mbong, Nathan, Wagenblast, Elvin, Orouji, Elias, Arruda, Andrea, Mitchell, Amanda, Notta, Faiyaz, Minden, Mark D., Lupien, Mathieu, Kaufmann, Kerstin B., Dick, John E.
Publicado 2022

Biological and therapeutic implications of a unique subtype of NPM1 mutated AML

por Mer, Arvind Singh, Heath, Emily M., Madani Tonekaboni, Seyed Ali, Dogan-Artun, Nergiz, Nair, Sisira Kadambat, Murison, Alex, Garcia-Prat, Laura, Shlush, Liran, Hurren, Rose, Voisin, Veronique, Bader, Gary D., Nislow, Corey, Rantalainen, Mattias, Lehmann, Soren, Gower, Mark, Guidos, Cynthia J., Lupien, Mathieu, Dick, John E., Minden, Mark D., Schimmer, Aaron D., Haibe-Kains, Benjamin
Publicado 2021

Multiscale interactome analysis coupled with off-target drug predictions reveals drug repurposing candidates for human coronavirus disease

por Sugiyama, Michael G., Cui, Haotian, Redka, Dar’ya S., Karimzadeh, Mehran, Rujas, Edurne, Maan, Hassaan, Hayat, Sikander, Cheung, Kyle, Misra, Rahul, McPhee, Joseph B., Viirre, Russell D., Haller, Andrew, Botelho, Roberto J., Karshafian, Raffi, Sabatinos, Sarah A., Fairn, Gregory D., Madani Tonekaboni, Seyed Ali, Windemuth, Andreas, Julien, Jean-Philippe, Shahani, Vijay, MacKinnon, Stephen S., Wang, Bo, Antonescu, Costin N.
Publicado 2021

Single-cell chromatin accessibility profiling of glioblastoma identifies an invasive cancer stem cell population associated with lower survival

por Guilhamon, Paul, Chesnelong, Charles, Kushida, Michelle M, Nikolic, Ana, Singhal, Divya, MacLeod, Graham, Madani Tonekaboni, Seyed Ali, Cavalli, Florence MG, Arlidge, Christopher, Rajakulendran, Nishani, Rastegar, Naghmeh, Hao, Xiaoguang, Hassam, Rozina, Smith, Laura J, Whetstone, Heather, Coutinho, Fiona J, Nadorp, Bettina, Ellestad, Katrina I, Luchman, H Artee, Chan, Jennifer Ai-wen, Shoichet, Molly S, Taylor, Michael D, Haibe-Kains, Benjamin, Weiss, Samuel, Angers, Stephane, Gallo, Marco, Dirks, Peter B, Lupien, Mathieu
Publicado 2021

Noncoding mutations target cis-regulatory elements of the FOXA1 plexus in prostate cancer

por Zhou, Stanley, Hawley, James R., Soares, Fraser, Grillo, Giacomo, Teng, Mona, Madani Tonekaboni, Seyed Ali, Hua, Junjie Tony, Kron, Ken J., Mazrooei, Parisa, Ahmed, Musaddeque, Arlidge, Christopher, Yun, Hwa Young, Livingstone, Julie, Huang, Vincent, Yamaguchi, Takafumi N., Espiritu, Shadrielle M. G., Zhu, Yanyun, Severson, Tesa M., Murison, Alex, Cameron, Sarina, Zwart, Wilbert, van der Kwast, Theodorus, Pugh, Trevor J., Fraser, Michael, Boutros, Paul C., Bristow, Robert G., He, Housheng Hansen, Lupien, Mathieu
Publicado 2020