Big data in IBD: big progress for clinical practice

por Seyed Tabib, Nasim Sadat, Madgwick, Matthew, Sudhakar, Padhmanand, Verstockt, Bram, Korcsmaros, Tamas, Vermeire, Séverine
Publicado 2020

Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists

por Bohar, Balazs, Fazekas, David, Madgwick, Matthew, Csabai, Luca, Olbei, Marton, Korcsmáros, Tamás, Szalay-Beko, Mate
Publicado 2023

CytokineLink: A Cytokine Communication Map to Analyse Immune Responses—Case Studies in Inflammatory Bowel Disease and COVID-19

por Olbei, Marton, Thomas, John P., Hautefort, Isabelle, Treveil, Agatha, Bohar, Balazs, Madgwick, Matthew, Gul, Lejla, Csabai, Luca, Modos, Dezso, Korcsmaros, Tamas
Publicado 2021

Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level

por Olbei, Marton, Bohar, Balazs, Fazekas, David, Madgwick, Matthew, Sudhakar, Padhmanand, Hautefort, Isabelle, Métris, Aline, Baranyi, Jozsef, Kingsley, Robert A., Korcsmaros, Tamas
Publicado 2022

Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell‐type specific manner that are altered in inf...

por Gul, Lejla, Modos, Dezso, Fonseca, Sonia, Madgwick, Matthew, Thomas, John P., Sudhakar, Padhmanand, Booth, Catherine, Stentz, Régis, Carding, Simon R., Korcsmaros, Tamas
Publicado 2022

ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways

por Treveil, Agatha, Bohar, Balazs, Sudhakar, Padhmanand, Gul, Lejla, Csabai, Luca, Olbei, Marton, Poletti, Martina, Madgwick, Matthew, Andrighetti, Tahila, Hautefort, Isabelle, Modos, Dezso, Korcsmaros, Tamas
Publicado 2021

Mapping the epithelial–immune cell interactome upon infection in the gut and the upper airways

por Poletti, Martina, Treveil, Agatha, Csabai, Luca, Gul, Leila, Modos, Dezso, Madgwick, Matthew, Olbei, Marton, Bohar, Balazs, Valdeolivas, Alberto, Turei, Denes, Verstockt, Bram, Triana, Sergio, Alexandrov, Theodore, Saez-Rodriguez, Julio, Stanifer, Megan L., Boulant, Steeve, Korcsmaros, Tamas
Publicado 2022

A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis

por Brooks-Warburton, Johanne, Modos, Dezso, Sudhakar, Padhmanand, Madgwick, Matthew, Thomas, John P., Bohar, Balazs, Fazekas, David, Zoufir, Azedine, Kapuy, Orsolya, Szalay-Beko, Mate, Verstockt, Bram, Hall, Lindsay J., Watson, Alastair, Tremelling, Mark, Parkes, Miles, Vermeire, Severine, Bender, Andreas, Carding, Simon R., Korcsmaros, Tamas
Publicado 2022

Immune checkpoint inhibitor-induced colitis is mediated by polyfunctional lymphocytes and is dependent on an IL23/IFNγ axis

por Lo, Jonathan W., Cozzetto, Domenico, Alexander, James L., Danckert, Nathan P., Madgwick, Matthew, Knox, Naomi, Sieh, Jillian Yong Xin, Olbei, Marton, Liu, Zhigang, Ibraheim, Hajir, Blanco, Jesus Miguens, Kudo, Hiromi, Seoane, Rocio Castro, Possamai, Lucia A., Goldin, Robert, Marchesi, Julian, Korcsmaros, Tamas, Lord, Graham M., Powell, Nick
Publicado 2023

Interleukin-22 regulates neutrophil recruitment in ulcerative colitis and is associated with resistance to ustekinumab therapy

por Pavlidis, Polychronis, Tsakmaki, Anastasia, Pantazi, Eirini, Li, Katherine, Cozzetto, Domenico, Digby- Bell, Jonathan, Yang, Feifei, Lo, Jonathan W., Alberts, Elena, Sa, Ana Caroline Costa, Niazi, Umar, Friedman, Joshua, Long, Anna K., Ding, Yuchun, Carey, Christopher D., Lamb, Christopher, Saqi, Mansoor, Madgwick, Matthew, Gul, Leila, Treveil, Agatha, Korcsmaros, Tamas, Macdonald, Thomas T., Lord, Graham M., Bewick, Gavin, Powell, Nick
Publicado 2022

SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks

por Csabai, Luca, Fazekas, Dávid, Kadlecsik, Tamás, Szalay-Bekő, Máté, Bohár, Balázs, Madgwick, Matthew, Módos, Dezső, Ölbei, Márton, Gul, Lejla, Sudhakar, Padhmanand, Kubisch, János, Oyeyemi, Oyebode James, Liska, Orsolya, Ari, Eszter, Hotzi, Bernadette, Billes, Viktor A, Molnár, Eszter, Földvári-Nagy, László, Csályi, Kitti, Demeter, Amanda, Pápai, Nóra, Koltai, Mihály, Varga, Máté, Lenti, Katalin, Farkas, Illés J, Türei, Dénes, Csermely, Péter, Vellai, Tibor, Korcsmáros, Tamás
Publicado 2021

Antibiotic-induced disturbances of the gut microbiota result in accelerated breast tumor growth

por McKee, Alastair M., Kirkup, Benjamin M., Madgwick, Matthew, Fowler, Wesley J., Price, Christopher A., Dreger, Sally A., Ansorge, Rebecca, Makin, Kate A., Caim, Shabhonam, Le Gall, Gwenaelle, Paveley, Jack, Leclaire, Charlotte, Dalby, Matthew, Alcon-Giner, Cristina, Andrusaite, Anna, Feng, Tzu-Yu, Di Modica, Martina, Triulzi, Tiziana, Tagliabue, Elda, Milling, Simon W.F., Weilbaecher, Katherine N., Rutkowski, Melanie R., Korcsmáros, Tamás, Hall, Lindsay J., Robinson, Stephen D.
Publicado 2021