Biological insights from topology independent comparison of protein 3D structures

por Nguyen, Minh N., Madhusudhan, M. S.
Publicado 2011

DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins

por Tan, Kuan Pern, Varadarajan, Raghavan, Madhusudhan, M. S.
Publicado 2011

CLICK—topology-independent comparison of biomolecular 3D structures

por Nguyen, M. N., Tan, K. P., Madhusudhan, M. S.
Publicado 2011

Peptide bond planarity constrains hydrogen bond geometry and influences secondary structure conformations

por Tan, Kuan Pern, Singh, Khushboo, Hazra, Anirban, Madhusudhan, M.S.
Publicado 2020

Protein Interaction Z Score Assessment (PIZSA): an empirical scoring scheme for evaluation of protein–protein interactions

por Roy, Ankit A, Dhawanjewar, Abhilesh S, Sharma, Parichit, Singh, Gulzar, Madhusudhan, M S
Publicado 2019

Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pK(a) of ionizable residues in proteins

por Tan, Kuan Pern, Nguyen, Thanh Binh, Patel, Siddharth, Varadarajan, Raghavan, Madhusudhan, M. S.
Publicado 2013

Topology independent comparison of RNA 3D structures using the CLICK algorithm

por Nguyen, Minh N., Sim, Adelene Y. L., Wan, Yue, Madhusudhan, M. S., Verma, Chandra
Publicado 2017

Protein complex compositions predicted by structural similarity

por Davis, Fred P., Braberg, Hannes, Shen, Min-Yi, Pieper, Ursula, Sali, Andrej, Madhusudhan, M.S.
Publicado 2006

Primary Mediastinal Hydatid Cyst Causing Diaphragmatic Palsy

por Gopivallabha, Madhusudhan M., Singh, Akshay Kumar, Pasarad, Ashwini Kumar, Parashuraman, Ponnuswamy, Govindareddy, Anil Kumar
Publicado 2020

Stereochemical Criteria for Prediction of the Effects of Proline Mutations on Protein Stability

por Bajaj, Kanika, Madhusudhan, M. S, Adkar, Bharat V, Chakrabarti, Purbani, Ramakrishnan, C, Sali, Andrej, Varadarajan, Raghavan
Publicado 2007

Predicting and designing therapeutics against the Nipah virus

por Sen, Neeladri, Kanitkar, Tejashree Rajaram, Roy, Ankit Animesh, Soni, Neelesh, Amritkar, Kaustubh, Supekar, Shreyas, Nair, Sanjana, Singh, Gulzar, Madhusudhan, M. S.
Publicado 2019

DBAli tools: mining the protein structure space

por Marti-Renom, Marc A., Pieper, Ursula, Madhusudhan, M. S., Rossi, Andrea, Eswar, Narayanan, Davis, Fred P., Al-Shahrour, Fátima, Dopazo, Joaquín, Sali, Andrej
Publicado 2007

Identification of Taxol-producing endophytic fungi isolated from Salacia oblonga through genomic mining approach

por Roopa, G., Madhusudhan, M.C., Sunil, K.C.R., Lisa, N., Calvin, R., Poornima, R., Zeinab, N., Kini, K.R., Prakash, H.S., Geetha, N.
Publicado 2015

Biophysical Properties of Intrinsically Disordered p130Cas Substrate Domain — Implication in Mechanosensing

por Hotta, Kinya, Ranganathan, Soumya, Liu, Ruchuan, Wu, Fei, Machiyama, Hiroaki, Gao, Rong, Hirata, Hiroaki, Soni, Neelesh, Ohe, Takashi, Hogue, Christopher W. V., Madhusudhan, M. S., Sawada, Yasuhiro
Publicado 2014

MODBASE: a database of annotated comparative protein structure models and associated resources

por Pieper, Ursula, Eswar, Narayanan, Davis, Fred P., Braberg, Hannes, Madhusudhan, M. S., Rossi, Andrea, Marti-Renom, Marc, Karchin, Rachel, Webb, Ben M., Eramian, David, Shen, Min-Yi, Kelly, Libusha, Melo, Francisco, Sali, Andrej
Publicado 2006