Evidence for horizontal gene transfer between Chlamydophila pneumoniae and Chlamydia phage

por Rosenwald, Anne G, Murray, Bradley, Toth, Theodore, Madupu, Ramana, Kyrillos, Alexandra, Arora, Gaurav
Publicado 2014

Meeting report: a workshop on Best Practices in Genome Annotation

por Madupu, Ramana, Brinkac, Lauren M., Harrow, Jennifer, Wilming, Laurens G., Böhme, Ulrike, Lamesch, Philippe, Hannick, Linda I.
Publicado 2010

CharProtDB: a database of experimentally characterized protein annotations

por Madupu, Ramana, Richter, Alexander, Dodson, Robert J., Brinkac, Lauren, Harkins, Derek, Durkin, Scott, Shrivastava, Susmita, Sutton, Granger, Haft, Daniel
Publicado 2012

The comprehensive microbial resource

por Davidsen, Tanja, Beck, Erin, Ganapathy, Anuradha, Montgomery, Robert, Zafar, Nikhat, Yang, Qi, Madupu, Ramana, Goetz, Phil, Galinsky, Kevin, White, Owen, Sutton, Granger
Publicado 2010

Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12

por Coil, David A., Badger, Jonathan H., Forberger, Heather C., Riggs, Florenta, Madupu, Ramana, Fedorova, Nadia, Ward, Naomi, Robb, Frank T., Eisen, Jonathan A.
Publicado 2014

Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347(T) (Phylum Nitrospirae)

por Bhatnagar, Srijak, Badger, Jonathan H., Madupu, Ramana, Khouri, Hoda M., O’Connor, Elizabeth M., Robb, Frank T., Ward, Naomi L., Eisen, Jonathan A.
Publicado 2015

Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium commune DSM 2178(T) (Phylum Thermodesulfobacteria)

por Bhatnagar, Srijak, Badger, Jonathan H., Madupu, Ramana, Khouri, Hoda M., O’Connor, Elizabeth M., Robb, Frank T., Ward, Naomi L., Eisen, Jonathan A.
Publicado 2015

The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data

por Tanenbaum, David M., Goll, Johannes, Murphy, Sean, Kumar, Prateek, Zafar, Nikhat, Thiagarajan, Mathangi, Madupu, Ramana, Davidsen, Tanja, Kagan, Leonid, Kravitz, Saul, Rusch, Douglas B., Yooseph, Shibu
Publicado 2010

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9

por Davidsen, Tanja, Madupu, Ramana, Sterk, Peter, Field, Dawn, Garrity, George, Gilbert, Jack, Glöckner, Frank Oliver, Hirschman, Lynette, Kolker, Eugene, Kottmann, Renzo, Kyrpides, Nikos, Meyer, Folker, Morrison, Norman, Schriml, Lynn, Tatusova, Tatiana, Wooley, John
Publicado 2010

Complete Genome Sequence of the Aerobic CO-Oxidizing Thermophile Thermomicrobium roseum

por Wu, Dongying, Raymond, Jason, Wu, Martin, Chatterji, Sourav, Ren, Qinghu, Graham, Joel E., Bryant, Donald A., Robb, Frank, Colman, Albert, Tallon, Luke J., Badger, Jonathan H., Madupu, Ramana, Ward, Naomi L., Eisen, Jonathan A.
Publicado 2009

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop

por Brister, James Rodney, Bao, Yiming, Kuiken, Carla, Lefkowitz, Elliot J., Le Mercier, Philippe, Leplae, Raphael, Madupu, Ramana, Scheuermann, Richard H., Schobel, Seth, Seto, Donald, Shrivastava, Susmita, Sterk, Peter, Zeng, Qiandong, Klimke, William, Tatusova, Tatiana
Publicado 2010

The Complete Genome Sequence of Haloferax volcanii DS2, a Model Archaeon

por Hartman, Amber L., Norais, Cédric, Badger, Jonathan H., Delmas, Stéphane, Haldenby, Sam, Madupu, Ramana, Robinson, Jeffrey, Khouri, Hoda, Ren, Qinghu, Lowe, Todd M., Maupin-Furlow, Julie, Pohlschroder, Mecky, Daniels, Charles, Pfeiffer, Friedhelm, Allers, Thorsten, Eisen, Jonathan A.
Publicado 2010

Type 1 Diabetes: Urinary Proteomics and Protein Network Analysis Support Perturbation of Lysosomal Function

por Singh, Harinder, Yu, Yanbao, Suh, Moo-Jin, Torralba, Manolito G, Stenzel, Robert D., Tovchigrechko, Andrey, Thovarai, Vishal, Harkins, Derek M., Rajagopala, Seesandra V., Osborne, Whitney, Cogen, Fran R., Kaplowitz, Paul B., Nelson, Karen E., Madupu, Ramana, Pieper, Rembert
Publicado 2017

Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901

por Wu, Martin, Ren, Qinghu, Durkin, A. Scott, Daugherty, Sean C, Brinkac, Lauren M, Dodson, Robert J, Madupu, Ramana, Sullivan, Steven A, Kolonay, James F, Nelson, William C, Tallon, Luke J, Jones, Kristine M, Ulrich, Luke E, Gonzalez, Juan M, Zhulin, Igor B, Robb, Frank T, Eisen, Jonathan A
Publicado 2005

Correction: Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901

por Wu, Martin, Ren, Qinghu, Durkin, A. Scott, Daugherty, Sean C, Brinkac, Lauren M, Dodson, Robert J, Madupu, Ramana, Sullivan, Steven A, Kolonay, James F, Haft, Daniel H, Nelson, William C, Tallon, Luke J, Jones, Kristine M, Ulrich, Luke E, Gonzalez, Juan M, Zhulin, Igor B, Robb, Frank T, Eisen, Jonathan A
Publicado 2006

Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species

por Fouts, Derrick E, Mongodin, Emmanuel F, Mandrell, Robert E, Miller, William G, Rasko, David A, Ravel, Jacques, Brinkac, Lauren M, DeBoy, Robert T, Parker, Craig T, Daugherty, Sean C, Dodson, Robert J, Durkin, A. Scott, Madupu, Ramana, Sullivan, Steven A, Shetty, Jyoti U, Ayodeji, Mobolanle A, Shvartsbeyn, Alla, Schatz, Michael C, Badger, Jonathan H, Fraser, Claire M, Nelson, Karen E
Publicado 2005

Pathema: a clade-specific bioinformatics resource center for pathogen research

por Brinkac, Lauren M., Davidsen, Tanja, Beck, Erin, Ganapathy, Anuradha, Caler, Elisabet, Dodson, Robert J., Durkin, A. Scott, Harkins, Derek M., Lorenzi, Hernan, Madupu, Ramana, Sebastian, Yinong, Shrivastava, Susmita, Thiagarajan, Mathangi, Orvis, Joshua, Sundaram, Jaideep P., Crabtree, Jonathon, Galens, Kevin, Zhao, Yongmei, Inman, Jason M., Montgomery, Robert, Schobel, Seth, Galinsky, Kevin, Tanenbaum, David M., Resnick, Adam, Zafar, Nikhat, White, Owen, Sutton, Granger
Publicado 2010

Genomic analysis of a large set of currently—and historically—important human adenovirus pathogens

por Ismail, Ashrafali M., Cui, Tiange, Dommaraju, Kalpana, Singh, Gurdeep, Dehghan, Shoaleh, Seto, Jason, Shrivastava, Susmita, Fedorova, Nadia B., Gupta, Neha, Stockwell, Timothy B., Halpin, Rebecca, Madupu, Ramana, Heim, Albert, Kajon, Adriana E., Romanowski, Eric G., Kowalski, Regis P., Malathi, Jambulingam, Therese, Kuzhanthai L., Madhavan, Hajib Narahari, Zhang, Qiwei, Ferreyra, Leonardo J., Jones, Morris S., Rajaiya, Jaya, Dyer, David W., Chodosh, James, Seto, Donald
Publicado 2018

Author Correction: Genomic analysis of a large set of currently—and historically—important human adenovirus pathogens

por Ismail, Ashrafali M., Cui, Tiange, Dommaraju, Kalpana, Singh, Gurdeep, Dehghan, Shoaleh, Seto, Jason, Shrivastava, Susmita, Fedorova, Nadia B., Gupta, Neha, Stockwell, Timothy B., Halpin, Rebecca, Madupu, Ramana, Heim, Albert, Kajon, Adriana E., Romanowski, Eric G., Kowalski, Regis P., Malathi, Jambulingam, Therese, Kuzhanthai L., Madhavan, Hajib Narahari, Zhang, Qiwei, Ferreyra, Leonardo J., Jones, Morris S., Rajaiya, Jaya, Dyer, David W., Chodosh, James, Seto, Donald
Publicado 2018

Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

por Paulsen, Ian T, Press, Caroline M, Ravel, Jacques, Kobayashi, Donald Y, Myers, Garry S A, Mavrodi, Dmitri V, DeBoy, Robert T, Seshadri, Rekha, Ren, Qinghu, Madupu, Ramana, Dodson, Robert J, Durkin, A Scott, Brinkac, Lauren M, Daugherty, Sean C, Sullivan, Stephen A, Rosovitz, Mary J, Gwinn, Michelle L, Zhou, Liwei, Schneider, Davd J, Cartinhour, Samuel W, Nelson, William C, Weidman, Janice, Watkins, Kisha, Tran, Kevin, Khouri, Hoda, Pierson, Elizabeth A, Pierson, Leland S, Thomashow, Linda S, Loper, Joyce E
Publicado 2005