The media composition as a crucial element in high-throughput metabolic network reconstruction

por Borer, Benedict, Magnúsdóttir, Stefanía
Publicado 2023

DEMETER: efficient simultaneous curation of genome-scale reconstructions guided by experimental data and refined gene annotations

por Heinken, Almut, Magnúsdóttir, Stefanía, Fleming, Ronan M T, Thiele, Ines
Publicado 2021

Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes

por Magnúsdóttir, Stefanía, Ravcheev, Dmitry, de Crécy-Lagard, Valérie, Thiele, Ines
Publicado 2015

Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires

por Bauer, Eugen, Laczny, Cedric Christian, Magnusdottir, Stefania, Wilmes, Paul, Thiele, Ines
Publicado 2015

Erratum to: Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires

por Bauer, Eugen, Laczny, Cedric Christian, Magnusdottir, Stefania, Wilmes, Paul, Thiele, Ines
Publicado 2016

The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities

por Baldini, Federico, Heinken, Almut, Heirendt, Laurent, Magnusdottir, Stefania, Fleming, Ronan M T, Thiele, Ines
Publicado 2019

Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in mos...

por Magnúsdóttir, Stefanía, Saraiva, Joao Pedro, Bartholomäus, Alexander, Soheili, Majid, Toscan, Rodolfo Brizola, Zhang, Junya, Nunes da Rocha, Ulisses
Publicado 2023

MetaboShiny: interactive analysis and metabolite annotation of mass spectrometry-based metabolomics data

por Wolthuis, Joanna C., Magnusdottir, Stefania, Pras-Raves, Mia, Moshiri, Maryam, Jans, Judith J. M., Burgering, Boudewijn, van Mil, Saskia, de Ridder, Jeroen
Publicado 2020

Multi-country metabolic signature discovery for chicken health classification

por Wolthuis, Joanna C., Magnúsdóttir, Stefanía, Stigter, Edwin, Tang, Yuen Fung, Jans, Judith, Gilbert, Myrthe, van der Hee, Bart, Langhout, Pim, Gerrits, Walter, Kies, Arie, de Ridder, Jeroen, van Mil, Saskia
Publicado 2023

Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine

por Heinken, Almut, Hertel, Johannes, Acharya, Geeta, Ravcheev, Dmitry A., Nyga, Malgorzata, Okpala, Onyedika Emmanuel, Hogan, Marcus, Magnúsdóttir, Stefanía, Martinelli, Filippo, Nap, Bram, Preciat, German, Edirisinghe, Janaka N., Henry, Christopher S., Fleming, Ronan M. T., Thiele, Ines
Publicado 2023

Ablation of liver Fxr results in an increased colonic mucus barrier in mice

por Ijssennagger, Noortje, van Rooijen, Kristel S., Magnúsdóttir, Stefanía, Ramos Pittol, José M., Willemsen, Ellen C.L., de Zoete, Marcel R., Baars, Matthijs J.D., Stege, Paul B., Colliva, Carolina, Pellicciari, Roberto, Youssef, Sameh A., de Bruin, Alain, Vercoulen, Yvonne, Kuipers, Folkert, van Mil, Saskia W.C.
Publicado 2021

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease

por Noronha, Alberto, Modamio, Jennifer, Jarosz, Yohan, Guerard, Elisabeth, Sompairac, Nicolas, Preciat, German, Daníelsdóttir, Anna Dröfn, Krecke, Max, Merten, Diane, Haraldsdóttir, Hulda S, Heinken, Almut, Heirendt, Laurent, Magnúsdóttir, Stefanía, Ravcheev, Dmitry A, Sahoo, Swagatika, Gawron, Piotr, Friscioni, Lucia, Garcia, Beatriz, Prendergast, Mabel, Puente, Alberto, Rodrigues, Mariana, Roy, Akansha, Rouquaya, Mouss, Wiltgen, Luca, Žagare, Alise, John, Elisabeth, Krueger, Maren, Kuperstein, Inna, Zinovyev, Andrei, Schneider, Reinhard, Fleming, Ronan M T, Thiele, Ines
Publicado 2019