Draft Genome Sequence of Aspergillus oryzae ATCC 12892

por Deng, Shuang, Pomraning, Kyle R., Bohutskyi, Pavlo, Magnuson, Jon K.
Publicado 2018

The Dunaliella salina organelle genomes: large sequences, inflated with intronic and intergenic DNA

por Smith, David Roy, Lee, Robert W, Cushman, John C, Magnuson, Jon K, Tran, Duc, Polle, Jürgen EW
Publicado 2010

Multiplexed CRISPR-Cas9-Based Genome Editing of Rhodosporidium toruloides

por Otoupal, Peter B., Ito, Masakazu, Arkin, Adam P., Magnuson, Jon K., Gladden, John M., Skerker, Jeffrey M.
Publicado 2019

Forward genetics screen coupled with whole-genome resequencing identifies novel gene targets for improving heterologous enzyme production in Aspergillus niger

por Reilly, Morgann C., Kim, Joonhoon, Lynn, Jed, Simmons, Blake A., Gladden, John M., Magnuson, Jon K., Baker, Scott E.
Publicado 2018

Post-genomic approaches to understanding interactions between fungi and their environment

por de Vries, Ronald P., Benoit, Isabelle, Doehlemann, Gunther, Kobayashi, Tetsuo, Magnuson, Jon K., Panisko, Ellen A., Baker, Scott E., Lebrun, Marc-Henri
Publicado 2011

A new approach to Cas9-based genome editing in Aspergillus niger that is precise, efficient and selectable

por Leynaud-Kieffer, Laure M. C., Curran, Samuel C., Kim, Irene, Magnuson, Jon K., Gladden, John M., Baker, Scott E., Simmons, Blake A.
Publicado 2019

Rapid and robust squashed spore/colony PCR of industrially important fungi

por Yuan, Guoliang, Czajka, Jeffrey J., Dai, Ziyu, Hu, Dehong, Pomraning, Kyle R., Hofstad, Beth A., Kim, Joonhoon, Robles, Ana L., Deng, Shuang, Magnuson, Jon K.
Publicado 2023

Transcriptomic analysis of the oleaginous yeast Lipomyces starkeyi during lipid accumulation on enzymatically treated corn stover hydrolysate

por Pomraning, Kyle R., Collett, James R., Kim, Joonhoon, Panisko, Ellen A., Culley, David E., Dai, Ziyu, Deng, Shuang, Hofstad, Beth A., Butcher, Mark G., Magnuson, Jon K.
Publicado 2019

Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica

por Pomraning, Kyle R., Bredeweg, Erin L., Kerkhoven, Eduard J., Barry, Kerrie, Haridas, Sajeet, Hundley, Hope, LaButti, Kurt, Lipzen, Anna, Yan, Mi, Magnuson, Jon K., Simmons, Blake A., Grigoriev, Igor V., Nielsen, Jens, Baker, Scott E.
Publicado 2018

Evaluation of chromosomal insertion loci in the Pseudomonas putida KT2440 genome for predictable biosystems design

por Chaves, Julie E., Wilton, Rosemarie, Gao, Yuqian, Munoz, Nathalie Munoz, Burnet, Meagan C., Schmitz, Zachary, Rowan, John, Burdick, Leah H., Elmore, Joshua, Guss, Adam, Close, Dan, Magnuson, Jon K., Burnum-Johnson, Kristin E., Michener, Joshua K.
Publicado 2020

Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides

por Kim, Joonhoon, Coradetti, Samuel T., Kim, Young-Mo, Gao, Yuqian, Yaegashi, Junko, Zucker, Jeremy D., Munoz, Nathalie, Zink, Erika M., Burnum-Johnson, Kristin E., Baker, Scott E., Simmons, Blake A., Skerker, Jeffrey M., Gladden, John M., Magnuson, Jon K.
Publicado 2021

Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species

por Dai, Ziyu, Pomraning, Kyle R., Deng, Shuang, Kim, Joonhoon, Campbell, Kristen B., Robles, Ana L., Hofstad, Beth A., Munoz, Nathalie, Gao, Yuqian, Lemmon, Teresa, Swita, Marie S., Zucker, Jeremy D., Kim, Young-Mo, Burnum-Johnson, Kristin E., Magnuson, Jon K.
Publicado 2023

Conversion of poplar biomass into high-energy density tricyclic sesquiterpene jet fuel blendstocks

por Geiselman, Gina M., Kirby, James, Landera, Alexander, Otoupal, Peter, Papa, Gabriella, Barcelos, Carolina, Sundstrom, Eric R., Das, Lalitendu, Magurudeniya, Harsha D., Wehrs, Maren, Rodriguez, Alberto, Simmons, Blake A., Magnuson, Jon K., Mukhopadhyay, Aindrila, Lee, Taek Soon, George, Anthe, Gladden, John M.
Publicado 2020

Expression of naturally ionic liquid-tolerant thermophilic cellulases in Aspergillus niger

por Amaike Campen, Saori, Lynn, Jed, Sibert, Stephanie J., Srikrishnan, Sneha, Phatale, Pallavi, Feldman, Taya, Guenther, Joel M., Hiras, Jennifer, Tran, Yvette Thuy An, Singer, Steven W., Adams, Paul D., Sale, Kenneth L., Simmons, Blake A., Baker, Scott E., Magnuson, Jon K., Gladden, John M.
Publicado 2017

Production of ent-kaurene from lignocellulosic hydrolysate in Rhodosporidium toruloides

por Geiselman, Gina M., Zhuang, Xun, Kirby, James, Tran-Gyamfi, Mary B., Prahl, Jan-Philip, Sundstrom, Eric R., Gao, Yuqian, Munoz Munoz, Nathalie, Nicora, Carrie D., Clay, Derek M., Papa, Gabriella, Burnum-Johnson, Kristin E., Magnuson, Jon K., Tanjore, Deepti, Skerker, Jeffrey M., Gladden, John M.
Publicado 2020

Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts

por Yaegashi, Junko, Kirby, James, Ito, Masakazu, Sun, Jian, Dutta, Tanmoy, Mirsiaghi, Mona, Sundstrom, Eric R., Rodriguez, Alberto, Baidoo, Edward, Tanjore, Deepti, Pray, Todd, Sale, Kenneth, Singh, Seema, Keasling, Jay D., Simmons, Blake A., Singer, Steven W., Magnuson, Jon K., Arkin, Adam P., Skerker, Jeffrey M., Gladden, John M.
Publicado 2017

Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus

por Pomraning, Kyle R., Dai, Ziyu, Munoz, Nathalie, Kim, Young-Mo, Gao, Yuqian, Deng, Shuang, Lemmon, Teresa, Swita, Marie S., Zucker, Jeremy D., Kim, Joonhoon, Mondo, Stephen J., Panisko, Ellen, Burnet, Meagan C., Webb-Robertson, Bobbie-Jo M., Hofstad, Beth, Baker, Scott E., Burnum-Johnson, Kristin E., Magnuson, Jon K.
Publicado 2022

Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering

por Ling, Chen, Peabody, George L., Salvachúa, Davinia, Kim, Young-Mo, Kneucker, Colin M., Calvey, Christopher H., Monninger, Michela A., Munoz, Nathalie Munoz, Poirier, Brenton C., Ramirez, Kelsey J., St. John, Peter C., Woodworth, Sean P., Magnuson, Jon K., Burnum-Johnson, Kristin E., Guss, Adam M., Johnson, Christopher W., Beckham, Gregg T.
Publicado 2022

Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in Aspergillus pseudoterreus

por Pomraning, Kyle R., Dai, Ziyu, Munoz, Nathalie, Kim, Young-Mo, Gao, Yuqian, Deng, Shuang, Kim, Joonhoon, Hofstad, Beth A., Swita, Marie S., Lemmon, Teresa, Collett, James R., Panisko, Ellen A., Webb-Robertson, Bobbie-Jo M., Zucker, Jeremy D., Nicora, Carrie D., De Paoli, Henrique, Baker, Scott E., Burnum-Johnson, Kristin E., Hillson, Nathan J., Magnuson, Jon K.
Publicado 2021

Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass

por Kirby, James, Geiselman, Gina M., Yaegashi, Junko, Kim, Joonhoon, Zhuang, Xun, Tran-Gyamfi, Mary Bao, Prahl, Jan-Philip, Sundstrom, Eric R., Gao, Yuqian, Munoz, Nathalie, Burnum-Johnson, Kristin E., Benites, Veronica T., Baidoo, Edward E. K., Fuhrmann, Anna, Seibel, Katharina, Webb-Robertson, Bobbie-Jo M., Zucker, Jeremy, Nicora, Carrie D., Tanjore, Deepti, Magnuson, Jon K., Skerker, Jeffrey M., Gladden, John M.
Publicado 2021