Induced fit with replica exchange improves protein complex structure prediction

por Harmalkar, Ameya, Mahajan, Sai Pooja, Gray, Jeffrey J.
Publicado 2022

Contextual protein and antibody encodings from equivariant graph transformers

por Mahajan, Sai Pooja, Ruffolo, Jeffrey A., Gray, Jeffrey J.
Publicado 2023

Deep Learning in Protein Structural Modeling and Design

por Gao, Wenhao, Mahajan, Sai Pooja, Sulam, Jeremias, Gray, Jeffrey J.
Publicado 2020

Simultaneous prediction of antibody backbone and side-chain conformations with deep learning

por Akpinaroglu, Deniz, Ruffolo, Jeffrey A., Mahajan, Sai Pooja, Gray, Jeffrey J.
Publicado 2022

Hallucinating structure-conditioned antibody libraries for target-specific binders

por Mahajan, Sai Pooja, Ruffolo, Jeffrey A., Frick, Rahel, Gray, Jeffrey J.
Publicado 2022

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

por Ruffolo, Jeffrey A., Chu, Lee-Shin, Mahajan, Sai Pooja, Gray, Jeffrey J.
Publicado 2023

Geometric potentials from deep learning improve prediction of CDR H3 loop structures

por Ruffolo, Jeffrey A, Guerra, Carlos, Mahajan, Sai Pooja, Sulam, Jeremias, Gray, Jeffrey J
Publicado 2020

The structure of the colorectal cancer-associated enzyme GalNAc-T12 reveals how nonconserved residues dictate its function

por Fernandez, Amy J., Daniel, Earnest James Paul, Mahajan, Sai Pooja, Gray, Jeffrey J., Gerken, Thomas A., Tabak, Lawrence A., Samara, Nadine L.
Publicado 2019

Computational affinity maturation of camelid single-domain intrabodies against the nonamyloid component of alpha-synuclein

por Mahajan, Sai Pooja, Meksiriporn, Bunyarit, Waraho-Zhmayev, Dujduan, Weyant, Kevin B., Kocer, Ilkay, Butler, David C., Messer, Anne, Escobedo, Fernando A., DeLisa, Matthew P.
Publicado 2018