CrypticProteinDB: an integrated database of proteome and immunopeptidome derived non-canonical cancer proteins

por Othoum, Ghofran, Maher, Christopher A
Publicado 2023

INTEGRATE-Vis: a tool for comprehensive gene fusion visualization

por Zhang, Jin, Gao, Teng, Maher, Christopher A.
Publicado 2017

INTEGRATE-neo: a pipeline for personalized gene fusion neoantigen discovery

por Zhang, Jin, Mardis, Elaine R, Maher, Christopher A
Publicado 2017

Pan-cancer proteogenomic analysis reveals long and circular noncoding RNAs encoding peptides

por Othoum, Ghofran, Coonrod, Emily, Zhao, Sidi, Dang, Ha X, Maher, Christopher A
Publicado 2020

Long, Noncoding RNA Dysregulation in Glioblastoma

por DeSouza, Patrick A., Qu, Xuan, Chen, Hao, Patel, Bhuvic, Maher, Christopher A., Kim, Albert H.
Publicado 2021

Large, Nested Variant of Urothelial Carcinoma Is Enriched with Activating Mutations in Fibroblast Growth Factor Receptor-3 among Other Targetable Mutations

por Gamallat, Yaser, Afsharpad, Mitra, El Hallani, Soufiane, Maher, Christopher A., Alimohamed, Nimira, Hyndman, Eric, Bismar, Tarek A.
Publicado 2023

Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer

por White, Nicole M, Cabanski, Christopher R, Silva-Fisher, Jessica M, Dang, Ha X, Govindan, Ramaswamy, Maher, Christopher A
Publicado 2014

Increased breast tissue receptor activator of nuclear factor-κB ligand (RANKL) gene expression is associated with higher mammographic density in premenopausal women

por Toriola, Adetunji T., Dang, Ha X., Hagemann, Ian S., Appleton, Catherine M., Colditz, Graham A., Luo, Jingqin, Maher, Christopher A.
Publicado 2017

HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data

por Qin, Zhaohui S, Yu, Jianjun, Shen, Jincheng, Maher, Christopher A, Hu, Ming, Kalyana-Sundaram, Shanker, Yu, Jindan, Chinnaiyan, Arul M
Publicado 2010

Heparin-based hydrogel scaffolding alters the transcriptomic profile and increases the chemoresistance of MDA-MB-231 triple-negative breast cancer cells

por Menon, Nidhi, Dang, Ha X., Datla, Udaya Sree, Moarefian, Maryam, Lawrence, Christopher B., Maher, Christopher A., Jones, Caroline N.
Publicado 2020

Antibody profiling of patients with prostate cancer reveals differences in antibody signatures among disease stages

por Potluri, Hemanth K, Ng, Tun Lee, Newton, Michael A, Zhang, Jin, Maher, Christopher A, Nelson, Peter S, McNeel, Douglas G
Publicado 2020

Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function

por Cabanski, Christopher R, White, Nicole M, Dang, Ha X, Silva-Fisher, Jessica M, Rauck, Corinne E, Cicka, Danielle, Maher, Christopher A
Publicado 2015

INTEGRATE: gene fusion discovery using whole genome and transcriptome data

por Zhang, Jin, White, Nicole M., Schmidt, Heather K., Fulton, Robert S., Tomlinson, Chad, Warren, Wesley C., Wilson, Richard K., Maher, Christopher A.
Publicado 2016

Single-cell transcriptomics reveals long noncoding RNAs associated with tumor biology and the microenvironment in pancreatic cancer

por Dang, Ha X, Saha, Debanjan, Jayasinghe, Reyka, Zhao, Sidi, Coonrod, Emily, Mudd, Jacqueline, Goedegebuure, S Peter, Fields, Ryan, Ding, Li, Maher, Christopher A
Publicado 2023

Long non-coding RNA LCAL62 / LINC00261 is associated with lung adenocarcinoma prognosis

por Dang, Ha X., White, Nicole M., Rozycki, Emily B., Felsheim, Brooke M., Watson, Mark A., Govindan, Ramaswamy, Luo, Jingqin, Maher, Christopher A.
Publicado 2020

PACT: a pipeline for analysis of circulating tumor DNA

por Webster, Jace, Dang, Ha X, Chauhan, Pradeep S, Feng, Wenjia, Shiang, Alex, Harris, Peter K, Pachynski, Russell K, Chaudhuri, Aadel A, Maher, Christopher A
Publicado 2023

Visualizing tumor evolution with the fishplot package for R

por Miller, Christopher A., McMichael, Joshua, Dang, Ha X., Maher, Christopher A., Ding, Li, Ley, Timothy J., Mardis, Elaine R., Wilson, Richard K.
Publicado 2016

Transcriptome Sequencing to Detect Gene Fusions in Cancer

por Maher, Christopher A., Kumar-Sinha, Chandan, Cao, Xuhong, Kalyana-Sundaram, Shanker, Han, Bo, Jing, Xiaojun, Sam, Lee, Barrette, Terrence, Palanisamy, Nallasivam, Chinnaiyan, Arul M.
Publicado 2009

A Comparison of Single Molecule and Amplification Based Sequencing of Cancer Transcriptomes

por Sam, Lee T., Lipson, Doron, Raz, Tal, Cao, Xuhong, Thompson, John, Milos, Patrice M., Robinson, Dan, Chinnaiyan, Arul M., Kumar-Sinha, Chandan, Maher, Christopher A.
Publicado 2011

Pan-Cancer Analysis Reveals Recurrent BCAR4 Gene Fusions across Solid Tumors

por Nickless, Andrew, Zhang, Jin, Othoum, Ghofran, Webster, Jace, Inkman, Matthew J., Coonrod, Emily, Fontes, Sherron, Rozycki, Emily B., Maher, Christopher A., White, Nicole M.
Publicado 2022