Benchmarking metagenomics classifiers on ancient viral DNA: a simulation study

por Arizmendi Cárdenas, Yami Ommar, Neuenschwander, Samuel, Malaspinas, Anna-Sapfo
Publicado 2022

Proboscidean Mitogenomics: Chronology and Mode of Elephant Evolution Using Mastodon as Outgroup

por Rohland, Nadin, Malaspinas, Anna-Sapfo, Pollack, Joshua L, Slatkin, Montgomery, Matheus, Paul, Hofreiter, Michael
Publicado 2007

Mapache: a flexible pipeline to map ancient DNA

por Neuenschwander, Samuel, Cruz Dávalos, Diana I, Anchieri, Lucas, Sousa da Mota, Bárbara, Bozzi, Davide, Rubinacci, Simone, Delaneau, Olivier, Rasmussen, Simon, Malaspinas, Anna-Sapfo
Publicado 2023

bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)

por Malaspinas, Anna-Sapfo, Tange, Ole, Moreno-Mayar, José Víctor, Rasmussen, Morten, DeGiorgio, Michael, Wang, Yong, Valdiosera, Cristina E., Politis, Gustavo, Willerslev, Eske, Nielsen, Rasmus
Publicado 2014

Human bony labyrinth is an indicator of population history and dispersal from Africa

por Ponce de León, Marcia S., Koesbardiati, Toetik, Weissmann, John David, Milella, Marco, Reyna-Blanco, Carlos S., Suwa, Gen, Kondo, Osamu, Malaspinas, Anna-Sapfo, White, Tim D., Zollikofer, Christoph P. E.
Publicado 2018

In-solution Y-chromosome capture-enrichment on ancient DNA libraries

por Cruz-Dávalos, Diana I., Nieves-Colón, María A., Sockell, Alexandra, Poznik, G. David, Schroeder, Hannes, Stone, Anne C., Bustamante, Carlos D., Malaspinas, Anna-Sapfo, Ávila-Arcos, María C.
Publicado 2018

Decline of genetic diversity in ancient domestic stallions in Europe

por Wutke, Saskia, Sandoval-Castellanos, Edson, Benecke, Norbert, Döhle, Hans-Jürgen, Friederich, Susanne, Gonzalez, Javier, Hofreiter, Michael, Lõugas, Lembi, Magnell, Ola, Malaspinas, Anna-Sapfo, Morales-Muñiz, Arturo, Orlando, Ludovic, Reissmann, Monika, Trinks, Alexandra, Ludwig, Arne
Publicado 2018

Imputation of ancient human genomes

por Sousa da Mota, Bárbara, Rubinacci, Simone, Cruz Dávalos, Diana Ivette, G. Amorim, Carlos Eduardo, Sikora, Martin, Johannsen, Niels N., Szmyt, Marzena H., Włodarczak, Piotr, Szczepanek, Anita, Przybyła, Marcin M., Schroeder, Hannes, Allentoft, Morten E., Willerslev, Eske, Malaspinas, Anna-Sapfo, Delaneau, Olivier
Publicado 2023

Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary

por Krause, Johannes, Unger, Tina, Noçon, Aline, Malaspinas, Anna-Sapfo, Kolokotronis, Sergios-Orestis, Stiller, Mathias, Soibelzon, Leopoldo, Spriggs, Helen, Dear, Paul H, Briggs, Adrian W, Bray, Sarah CE, O'Brien, Stephen J, Rabeder, Gernot, Matheus, Paul, Cooper, Alan, Slatkin, Montgomery, Pääbo, Svante, Hofreiter, Michael
Publicado 2008

Inference of natural selection from ancient DNA

por Dehasque, Marianne, Ávila‐Arcos, María C., Díez‐del‐Molino, David, Fumagalli, Matteo, Guschanski, Katerina, Lorenzen, Eline D., Malaspinas, Anna‐Sapfo, Marques‐Bonet, Tomas, Martin, Michael D., Murray, Gemma G. R., Papadopulos, Alexander S. T., Therkildsen, Nina Overgaard, Wegmann, Daniel, Dalén, Love, Foote, Andrew D.
Publicado 2020

Influenza Virus Drug Resistance: A Time-Sampled Population Genetics Perspective

por Foll, Matthieu, Poh, Yu-Ping, Renzette, Nicholas, Ferrer-Admetlla, Anna, Bank, Claudia, Shim, Hyunjin, Malaspinas, Anna-Sapfo, Ewing, Gregory, Liu, Ping, Wegmann, Daniel, Caffrey, Daniel R., Zeldovich, Konstantin B., Bolon, Daniel N., Wang, Jennifer P., Kowalik, Timothy F., Schiffer, Celia A., Finberg, Robert W., Jensen, Jeffrey D.
Publicado 2014

Ancient nuclear genomes enable repatriation of Indigenous human remains

por Wright, Joanne L., Wasef, Sally, Heupink, Tim H., Westaway, Michael C., Rasmussen, Simon, Pardoe, Colin, Fourmile, Gudju Gudju, Young, Michael, Johnson, Trish, Slade, Joan, Kennedy, Roy, Winch, Patsy, Pappin, Mary, Wales, Tapij, Bates, William “Badger”, Hamilton, Sharnie, Whyman, Neville, van Holst Pellekaan, Sheila, McAllister, Peter J., Taçon, Paul S.C., Curnoe, Darren, Li, Ruiqiang, Millar, Craig, Subramanian, Sankar, Willerslev, Eske, Malaspinas, Anna-Sapfo, Sikora, Martin, Lambert, David M.
Publicado 2018

The genomic history of the Aegean palatial civilizations

por Clemente, Florian, Unterländer, Martina, Dolgova, Olga, Amorim, Carlos Eduardo G., Coroado-Santos, Francisco, Neuenschwander, Samuel, Ganiatsou, Elissavet, Cruz Dávalos, Diana I., Anchieri, Lucas, Michaud, Frédéric, Winkelbach, Laura, Blöcher, Jens, Arizmendi Cárdenas, Yami Ommar, Sousa da Mota, Bárbara, Kalliga, Eleni, Souleles, Angelos, Kontopoulos, Ioannis, Karamitrou-Mentessidi, Georgia, Philaniotou, Olga, Sampson, Adamantios, Theodorou, Dimitra, Tsipopoulou, Metaxia, Akamatis, Ioannis, Halstead, Paul, Kotsakis, Kostas, Urem-Kotsou, Dushka, Panagiotopoulos, Diamantis, Ziota, Christina, Triantaphyllou, Sevasti, Delaneau, Olivier, Jensen, Jeffrey D., Moreno-Mayar, J. Víctor, Burger, Joachim, Sousa, Vitor C., Lao, Oscar, Malaspinas, Anna-Sapfo, Papageorgopoulou, Christina
Publicado 2021