A comparative recombination analysis of human coronaviruses and implications for the SARS-CoV-2 pandemic

por Pollett, Simon, Conte, Matthew A., Sanborn, Mark, Jarman, Richard G., Lidl, Grace M., Modjarrad, Kayvon, Maljkovic Berry, Irina
Publicado 2021

Intrahost SARS-CoV-2 k-mer Identification Method (iSKIM) for Rapid Detection of Mutations of Concern Reveals Emergence of Global Mutation Patterns

por Thommana, Ashley, Shakya, Migun, Gandhi, Jaykumar, Fung, Christian K., Chain, Patrick S. G., Maljkovic Berry, Irina, Conte, Matthew A.
Publicado 2022

The origins of dengue and chikungunya viruses in Ecuador following increased migration from Venezuela and Colombia

por Maljkovic Berry, Irina, Rutvisuttinunt, Wiriya, Sippy, Rachel, Beltran-Ayala, Efrain, Figueroa, Katherine, Ryan, Sadie, Srikanth, Abhinaya, Stewart-Ibarra, Anna M., Endy, Timothy, Jarman, Richard G.
Publicado 2020

Genomic surveillance of SARS-CoV-2 in US military compounds in Afghanistan reveals multiple introductions and outbreaks of Alpha and Delta variants

por Maljkovic Berry, Irina, Hang, Jun, Fung, Christian, Yang, Yu, Chibucos, Marcus, Pollio, Adam, Gandhi, Jay, Li, Tao, Conte, Matthew A., Lidl, Grace M., Johannigman, Jay A., Friberg, Heather
Publicado 2022

A Department of Defense Laboratory Consortium Approach to Next Generation Sequencing and Bioinformatics Training for Infectious Disease Surveillance in Kenya

por Maljkovic Berry, Irina, Rutvisuttinunt, Wiriya, Voegtly, Logan J., Prieto, Karla, Pollett, Simon, Cer, Regina Z., Kugelman, Jeffrey R., Bishop-Lilly, Kimberly A., Morton, Lindsay, Waitumbi, John, Jarman, Richard G.
Publicado 2020

Rapid High-Throughput Whole-Genome Sequencing of SARS-CoV-2 by Using One-Step Reverse Transcription-PCR Amplification with an Integrated Microfluidic System and Next-Generation Seq...

por Li, Tao, Chung, Hye Kyung, Pireku, Papa K., Beitzel, Brett F., Sanborn, Mark A., Tang, Cynthia Y., Hammer, Richard D., Ritter, Detlef, Wan, Xiu-Feng, Maljkovic Berry, Irina, Hang, Jun
Publicado 2021

Global Outbreaks and Origins of a Chikungunya Virus Variant Carrying Mutations Which May Increase Fitness for Aedes aegypti: Revelations from the 2016 Mandera, Kenya Outbreak

por Maljkovic Berry, Irina, Eyase, Fredrick, Pollett, Simon, Konongoi, Samson Limbaso, Joyce, Michael Gordon, Figueroa, Katherine, Ofula, Victor, Koka, Helen, Koskei, Edith, Nyunja, Albert, Mancuso, James D., Jarman, Richard G., Sang, Rosemary
Publicado 2019

Effect of low-passage number on dengue consensus genomes and intra-host variant frequencies

por Fung, Christian K., Li, Tao, Pollett, Simon, Alera, Maria Theresa, Yoon, In-Kyu, Hang, Jun, Macareo, Louis, Srikiatkhachorn, Anon, Ellison, Damon, Rothman, Alan L., Fernandez, Stefan, Jarman, Richard G., Maljkovic Berry, Irina
Publicado 2021

A Phase 1 Two-Arm, Randomized, Double-Blind, Active-Controlled Study of Live, Oral Plasmid-Derived Adenovirus Type 4 and Type 7 Vaccines in Seronegative Adults

por Beaty, Shannon, Collins, Natalie, Karasavvas, Nicos, Kuschner, Robert, Hang, Jun, Adhikari, Anima, Maljkovic Berry, Irina, Fung, Christian, Walls, Shannon, Betancourt, Elena, Mendy, Jason, Lock, Michael, Gierman, Emma, Bennett, Sean, Shabram, Paul, Warfield, Kelly
Publicado 2023

Analysis of cell-associated DENV RNA by oligo(dT) primed 5’ capture scRNAseq

por Sanborn, Mark A., Li, Tao, Victor, Kaitlin, Siegfried, Hayden, Fung, Christian, Rothman, Alan L., Srikiatkhachorn, Anon, Fernandez, Stefan, Ellison, Damon, Jarman, Richard G., Friberg, Heather, Maljkovic Berry, Irina, Currier, Jeffrey R., Waickman, Adam T.
Publicado 2020

Human APOBEC3 Induced Mutation of Human Immunodeficiency Virus Type-1 Contributes to Adaptation and Evolution in Natural Infection

por Kim, Eun-Young, Lorenzo-Redondo, Ramon, Little, Susan J., Chung, Yoon-Seok, Phalora, Prabhjeet K., Maljkovic Berry, Irina, Archer, John, Penugonda, Sudhir, Fischer, Will, Richman, Douglas D., Bhattacharya, Tanmoy, Malim, Michael H., Wolinsky, Steven M.
Publicado 2014

Complete Genome Sequences of Two Human Adenovirus Type 55 Isolates from South Korea and the United States

por Hughes, Jerry J., Yang, Yu, Fries, Anthony C., Maljkovic Berry, Irina, Pollio, Adam R., Fung, Christian K., Karasavvas, Nicos, Jarman, Richard G., Kushner, Robert A., Kajon, Adriana E., Collins, Natalie D., Macias, Elizabeth, Hang, Jun
Publicado 2021

Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

por Maljkovic Berry, Irina, Melendrez, Melanie C., Li, Tao, Hawksworth, Anthony W., Brice, Gary T., Blair, Patrick J., Halsey, Eric S., Williams, Maya, Fernandez, Stefan, Yoon, In-Kyu, Edwards, Leslie D., Kuschner, Robert, Lin, Xiaoxu, Thomas, Stephen J., Jarman, Richard G.
Publicado 2016

Using “outbreak science” to strengthen the use of models during epidemics

por Rivers, Caitlin, Chretien, Jean-Paul, Riley, Steven, Pavlin, Julie A., Woodward, Alexandra, Brett-Major, David, Maljkovic Berry, Irina, Morton, Lindsay, Jarman, Richard G., Biggerstaff, Matthew, Johansson, Michael A., Reich, Nicholas G., Meyer, Diane, Snyder, Michael R., Pollett, Simon
Publicado 2019

Transmission of SARS-CoV-2 among recruits in a US Army training environment: a brief report

por Hakre, Shilpa, Maljkovic-Berry, Irina, Hang, Jun, Conte, Matthew A, Pollio, Adam R, Fung, Christian K, Gandhi, Jaykumar, Peel, Sheila A, Lidl, Grace M, Huhtanen, Mark E, Hall, Tara L, Modjarrad, Kayvon, Friberg, Heather L, O’Connell, Robert J, Scott, Paul T
Publicado 2023

Investigation of an outbreak of COVID-19 among U.S. military personnel and beneficiaries stationed in the Republic of Korea, June-July 2021

por Hakre, Shilpa, Lam, Evelyn Y., Maljkovic-Berry, Irina, Hang, Jun, Pow Sang, Luis A., Bianchi, Elizabeth J., Fung, Christian, Gandhi, Jay, Chibucos, Marcus, Conte, Matthew A., Pollio, Adam R., Mariskanish, Christine A., Mansfield, Luke A., Modjarrad, Kayvon, Friberg-Robertson, Heather L., Lidl, Grace M., Scott, Paul T., Lougee, Douglas A.
Publicado 2022

The Burden of Dengue Fever and Chikungunya in Southern Coastal Ecuador: Epidemiology, Clinical Presentation, and Phylogenetics from the First Two Years of a Prospective Study

por Stewart-Ibarra, Anna M., Ryan, Sadie J., Kenneson, Aileen, King, Christine A., Abbott, Mark, Barbachano-Guerrero, Arturo, Beltrán-Ayala, Efraín, Borbor-Cordova, Mercy J., Cárdenas, Washington B., Cueva, Cinthya, Finkelstein, Julia L., Lupone, Christina D., Jarman, Richard G., Maljkovic Berry, Irina, Mehta, Saurabh, Polhemus, Mark, Silva, Mercy, Endy, Timothy P.
Publicado 2018

SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission

por Sapoval, Nicolae, Mahmoud, Medhat, Jochum, Michael D., Liu, Yunxi, Elworth, R.A. Leo, Wang, Qi, Albin, Dreycey, Ogilvie, Huw A., Lee, Michael D., Villapol, Sonia, Hernandez, Kyle M., Maljkovic Berry, Irina, Foox, Jonathan, Beheshti, Afshin, Ternus, Krista, Aagaard, Kjersti M., Posada, David, Mason, Christopher E., Sedlazeck, Fritz J., Treangen, Todd J.
Publicado 2021

Beneath the surface: Amino acid variation underlying two decades of dengue virus antigenic dynamics in Bangkok, Thailand

por Huang, Angkana T., Salje, Henrik, Escoto, Ana Coello, Chowdhury, Nayeem, Chávez, Christian, Garcia-Carreras, Bernardo, Rutvisuttinunt, Wiriya, Maljkovic Berry, Irina, Gromowski, Gregory D., Wang, Lin, Klungthong, Chonticha, Thaisomboonsuk, Butsaya, Nisalak, Ananda, Trimmer-Smith, Luke M., Rodriguez-Barraquer, Isabel, Ellison, Damon W., Jones, Anthony R., Fernandez, Stefan, Thomas, Stephen J., Smith, Derek J., Jarman, Richard, Whitehead, Stephen S., Cummings, Derek A. T., Katzelnick, Leah C.
Publicado 2022