OR26-5 Functional Analysis of Estrogen-Regulated Enhancer RNAs in Breast Cancer Cells

por Hou, Tim, Malladi, Venkat, Nagari, Anusha, Kraus, W
Publicado 2019

Novel long non-coding RNAs associated with inflammation and macrophage activation in human

por Chini, Avisankar, Guha, Prarthana, Malladi, Venkat S., Guo, Zibiao, Mandal, Subhrangsu S.
Publicado 2023

Total Functional Score of Enhancer Elements Identifies Lineage-Specific Enhancers That Drive Differentiation of Pancreatic Cells

por Malladi, Venkat S., Nagari, Anusha, Franco, Hector L, Kraus, W Lee
Publicado 2020

Decoding Human Genome Regulatory Features That Influence HIV-1 Proviral Expression and Fate Through an Integrated Genomics Approach

por Ruess, Holly, Lee, Jeon, Guzman, Carlos, Malladi, Venkat S, D’Orso, Iván
Publicado 2022

Open collaborative writing with Manubot

por Himmelstein, Daniel S., Rubinetti, Vincent, Slochower, David R., Hu, Dongbo, Malladi, Venkat S., Greene, Casey S., Gitter, Anthony
Publicado 2019

A scalable open-source MATLAB toolbox for reconstruction and analysis of multispectral optoacoustic tomography data

por O’Kelly, Devin, Campbell, James, Gerberich, Jeni L., Karbasi, Paniz, Malladi, Venkat, Jamieson, Andrew, Wang, Liqiang, Mason, Ralph P.
Publicado 2021

Human pancreatic cancer cell exosomes, but not human normal cell exosomes, act as an initiator in cell transformation

por Stefanius, Karoliina, Servage, Kelly, de Souza Santos, Marcela, Gray, Hillery Fields, Toombs, Jason E, Chimalapati, Suneeta, Kim, Min S, Malladi, Venkat S, Brekken, Rolf, Orth, Kim
Publicado 2019

Acute interstitial nephritis, a potential predictor of response to immune checkpoint inhibitors in renal cell carcinoma

por Patel, Viral, Elias, Roy, Formella, Joseph, Schwartzman, William, Christie, Alana, Cai, Qi, Malladi, Venkat, Kapur, Payal, Vazquez, Miguel, McKay, Renee, Pedrosa, Ivan, Hannan, Raquibul, Hammers, Hans, Brugarolas, James
Publicado 2020

Twist2 amplification in rhabdomyosarcoma represses myogenesis and promotes oncogenesis by redirecting MyoD DNA binding

por Li, Stephen, Chen, Kenian, Zhang, Yichi, Barnes, Spencer D., Jaichander, Priscilla, Zheng, Yanbin, Hassan, Mohammed, Malladi, Venkat S., Skapek, Stephen X., Xu, Lin, Bassel-Duby, Rhonda, Olson, Eric N., Liu, Ning
Publicado 2019

Perivascular Mesenchymal Cells Control Adipose Tissue Macrophage Accrual in Obesity

por Shan, Bo, Shao, Mengle, Zhang, Qianbin, Hepler, Chelsea, Paschoal, Vivian A., Barnes, Spencer D., Vishvanath, Lavanya, An, Yu A., Jia, Lin, Malladi, Venkat S., Strand, Douglas W., Gupta, Olga T., Elmquist, Joel K., Oh, Dayoung, Gupta, Rana K.
Publicado 2020

IRF1 governs the differential interferon-stimulated gene responses in human monocytes and macrophages by regulating chromatin accessibility

por Song, Ran, Gao, Yajing, Dozmorov, Igor, Malladi, Venkat, Saha, Irene, McDaniel, Margaret M., Parameswaran, Sreeja, Liang, Chaoying, Arana, Carlos, Zhang, Bo, Wakeland, Benjamin, Zhou, Jinchun, Weirauch, Matthew T., Kottyan, Leah C., Wakeland, Edward K., Pasare, Chandrashekhar
Publicado 2021

Suppression of Myeloid Cell Arginase Activity leads to Therapeutic Response in a NSCLC Mouse Model by Activating Anti-Tumor Immunity

por Miret, Juan J., Kirschmeier, Paul, Koyama, Shohei, Zhu, Mingrui, Li, Yvonne Y., Naito, Yujiro, Wu, Min, Malladi, Venkat S., Huang, Wei, Walker, William, Palakurthi, Sangeetha, Dranoff, Glenn, Hammerman, Peter S., Pecot, Chad V., Wong, Kwok-Kin, Akbay, Esra A.
Publicado 2019

Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis

por Franco, Hector L., Nagari, Anusha, Malladi, Venkat S., Li, Wenqian, Xi, Yuanxin, Richardson, Dana, Allton, Kendra L., Tanaka, Kaori, Li, Jing, Murakami, Shino, Keyomarsi, Khandan, Bedford, Mark T., Shi, Xiaobing, Li, Wei, Barton, Michelle C., Dent, Sharon Y.R., Kraus, W. Lee
Publicado 2018

ENCODE data at the ENCODE portal

por Sloan, Cricket A., Chan, Esther T., Davidson, Jean M., Malladi, Venkat S., Strattan, J. Seth, Hitz, Benjamin C., Gabdank, Idan, Narayanan, Aditi K., Ho, Marcus, Lee, Brian T., Rowe, Laurence D., Dreszer, Timothy R., Roe, Greg, Podduturi, Nikhil R., Tanaka, Forrest, Hong, Eurie L., Cherry, J. Michael
Publicado 2016

A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra

por Henry, Gervaise H., Malewska, Alicia, Joseph, Diya B., Malladi, Venkat S., Lee, Jeon, Torrealba, Jose, Mauck, Ryan J., Gahan, Jeffrey C., Raj, Ganesh V., Roehrborn, Claus G., Hon, Gary C., MacConmara, Malcolm P., Reese, Jeffrey C., Hutchinson, Ryan C., Vezina, Chad M., Strand, Douglas W.
Publicado 2018

Tumor loss-of-function mutations in STK11/LKB1 induce cachexia

por Iyengar, Puneeth, Gandhi, Aakash Y., Granados, Jorge, Guo, Tong, Gupta, Arun, Yu, Jinhai, Llano, Ernesto M., Zhang, Faya, Gao, Ang, Kandathil, Asha, Williams, Dorothy, Gao, Boning, Girard, Luc, Malladi, Venkat S., Shelton, John M., Evers, Bret M., Hannan, Raquibul, Ahn, Chul, Minna, John D., Infante, Rodney E.
Publicado 2023

Ontology application and use at the ENCODE DCC

por Malladi, Venkat S., Erickson, Drew T., Podduturi, Nikhil R., Rowe, Laurence D., Chan, Esther T., Davidson, Jean M., Hitz, Benjamin C., Ho, Marcus, Lee, Brian T., Miyasato, Stuart, Roe, Gregory R., Simison, Matt, Sloan, Cricket A., Strattan, J. Seth, Tanaka, Forrest, Kent, W. James, Cherry, J. Michael, Hong, Eurie L.
Publicado 2015

Histone modification profiling in breast cancer cell lines highlights commonalities and differences among subtypes

por Xi, Yuanxin, Shi, Jiejun, Li, Wenqian, Tanaka, Kaori, Allton, Kendra L., Richardson, Dana, Li, Jing, Franco, Hector L., Nagari, Anusha, Malladi, Venkat S., Coletta, Luis Della, Simper, Melissa S., Keyomarsi, Khandan, Shen, Jianjun, Bedford, Mark T., Shi, Xiaobing, Barton, Michelle C., Kraus, W. Lee, Li, Wei, Dent, Sharon Y. R.
Publicado 2018

Principles of metadata organization at the ENCODE data coordination center

por Hong, Eurie L., Sloan, Cricket A., Chan, Esther T., Davidson, Jean M., Malladi, Venkat S., Strattan, J. Seth, Hitz, Benjamin C., Gabdank, Idan, Narayanan, Aditi K., Ho, Marcus, Lee, Brian T., Rowe, Laurence D., Dreszer, Timothy R., Roe, Greg R., Podduturi, Nikhil R., Tanaka, Forrest, Hilton, Jason A., Cherry, J. Michael
Publicado 2016

ENCODE Data in the UCSC Genome Browser: year 5 update

por Rosenbloom, Kate R., Sloan, Cricket A., Malladi, Venkat S., Dreszer, Timothy R., Learned, Katrina, Kirkup, Vanessa M., Wong, Matthew C., Maddren, Morgan, Fang, Ruihua, Heitner, Steven G., Lee, Brian T., Barber, Galt P., Harte, Rachel A., Diekhans, Mark, Long, Jeffrey C., Wilder, Steven P., Zweig, Ann S., Karolchik, Donna, Kuhn, Robert M., Haussler, David, Kent, W. James
Publicado 2013