Advancing Genome-Resolved Metagenomics beyond the Shotgun

por Malmstrom, Rex R., Eloe-Fadrosh, Emiley A.
Publicado 2019

Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population

por Birzu, Gabriel, Muralidharan, Harihara Subrahmaniam, Goudeau, Danielle, Malmstrom, Rex R., Fisher, Daniel S., Bhaya, Devaki
Publicado 2023

Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

por Rodrigue, Sébastien, Malmstrom, Rex R., Berlin, Aaron M., Birren, Bruce W., Henn, Matthew R., Chisholm, Sallie W.
Publicado 2009

Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics

por Roux, Simon, Chan, Leong-Keat, Egan, Rob, Malmstrom, Rex R., McMahon, Katherine D., Sullivan, Matthew B.
Publicado 2017

Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage

por Boeuf, Dominique, Eppley, John M., Mende, Daniel R., Malmstrom, Rex R., Woyke, Tanja, DeLong, Edward F.
Publicado 2021

BONCAT-FACS-Seq reveals the active fraction of a biocrust community undergoing a wet-up event

por Trexler, Ryan V., Van Goethem, Marc W., Goudeau, Danielle, Nath, Nandita, Malmstrom, Rex R., Northen, Trent R., Couradeau, Estelle
Publicado 2023

Hidden diversity of soil giant viruses

por Schulz, Frederik, Alteio, Lauren, Goudeau, Danielle, Ryan, Elizabeth M., Yu, Feiqiao B., Malmstrom, Rex R., Blanchard, Jeffrey, Woyke, Tanja
Publicado 2018

A pipeline for targeted metagenomics of environmental bacteria

por Grieb, Anissa, Bowers, Robert M., Oggerin, Monike, Goudeau, Danielle, Lee, Janey, Malmstrom, Rex R., Woyke, Tanja, Fuchs, Bernhard M.
Publicado 2020

Unlocking Short Read Sequencing for Metagenomics

por Rodrigue, Sébastien, Materna, Arne C., Timberlake, Sonia C., Blackburn, Matthew C., Malmstrom, Rex R., Alm, Eric J., Chisholm, Sallie W.
Publicado 2010

Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites

por Villalobos-Escobedo, José Manuel, Mercado-Esquivias, Maria Belen, Adams, Catharine, Kauffman, W. Berkeley, Malmstrom, Rex R., Deutschbauer, Adam M., Glass, N. Louise
Publicado 2023

Oxidative Pathways of Deoxyribose and Deoxyribonate Catabolism

por Price, Morgan N., Ray, Jayashree, Iavarone, Anthony T., Carlson, Hans K., Ryan, Elizabeth M., Malmstrom, Rex R., Arkin, Adam P., Deutschbauer, Adam M.
Publicado 2019

Probing the active fraction of soil microbiomes using BONCAT-FACS

por Couradeau, Estelle, Sasse, Joelle, Goudeau, Danielle, Nath, Nandita, Hazen, Terry C., Bowen, Ben P., Chakraborty, Romy, Malmstrom, Rex R., Northen, Trent R.
Publicado 2019

Freshwater carbon and nutrient cycles revealed through reconstructed population genomes

por Linz, Alexandra M., He, Shaomei, Stevens, Sarah L.R., Anantharaman, Karthik, Rohwer, Robin R., Malmstrom, Rex R., Bertilsson, Stefan, McMahon, Katherine D.
Publicado 2018

Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI

por Hamilton, Joshua J., Garcia, Sarahi L., Brown, Brittany S., Oyserman, Ben O., Moya-Flores, Francisco, Bertilsson, Stefan, Malmstrom, Rex R., Forest, Katrina T., McMahon, Katherine D.
Publicado 2017

Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes

por He, Shaomei, Stevens, Sarah L. R., Chan, Leong-Keat, Bertilsson, Stefan, Glavina del Rio, Tijana, Tringe, Susannah G., Malmstrom, Rex R., McMahon, Katherine D.
Publicado 2017

Subsurface hydrocarbon degradation strategies in low- and high-sulfate coal seam communities identified with activity-based metagenomics

por Schweitzer, Hannah D., Smith, Heidi J., Barnhart, Elliott P., McKay, Luke J., Gerlach, Robin, Cunningham, Alfred B., Malmstrom, Rex R., Goudeau, Danielle, Fields, Matthew W.
Publicado 2022

Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions

por Berg, Maureen, Goudeau, Danielle, Olmsted, Charles, McMahon, Katherine D., Yitbarek, Senay, Thweatt, Jennifer L., Bryant, Donald A., Eloe-Fadrosh, Emiley A., Malmstrom, Rex R., Roux, Simon
Publicado 2021

Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design

por Sieradzki, Ella T., Koch, Benjamin J., Greenlon, Alex, Sachdeva, Rohan, Malmstrom, Rex R., Mau, Rebecca L., Blazewicz, Steven J., Firestone, Mary K., Hofmockel, Kirsten S., Schwartz, Egbert, Hungate, Bruce A., Pett-Ridge, Jennifer
Publicado 2020

Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations

por Garcia, Sarahi L., Stevens, Sarah L. R., Crary, Benjamin, Martinez-Garcia, Manuel, Stepanauskas, Ramunas, Woyke, Tanja, Tringe, Susannah G., Andersson, Siv G. E., Bertilsson, Stefan, Malmstrom, Rex R., McMahon, Katherine D.
Publicado 2017

Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea

por Murali, Ranjani, Yu, Hang, Speth, Daan R., Wu, Fabai, Metcalfe, Kyle S., Crémière, Antoine, Laso-Pèrez, Rafael, Malmstrom, Rex R., Goudeau, Danielle, Woyke, Tanja, Hatzenpichler, Roland, Chadwick, Grayson L., Connon, Stephanie A., Orphan, Victoria J.
Publicado 2023