Many Faces of Next-Generation Sequencing in Gene Expression Studies

por Malygin, Alexey A.
Publicado 2023

Structural motifs of the bacterial ribosomal proteins S20, S18 and S16 that contact rRNA present in the eukaryotic ribosomal proteins S25, S26 and S27A, respectively

por Malygin, Alexey A., Karpova, Galina G.
Publicado 2010

HCV IRES interacts with the 18S rRNA to activate the 40S ribosome for subsequent steps of translation initiation

por Malygin, Alexey A., Kossinova, Olga A., Shatsky, Ivan N., Karpova, Galina G.
Publicado 2013

Mutation at the Site of Hydroxylation in the Ribosomal Protein uL15 (RPL27a) Causes Specific Changes in the Repertoire of mRNAs Translated in Mammalian Cells

por Zolotenkova, Elizaveta A., Gopanenko, Alexander V., Tupikin, Alexey E., Kabilov, Marsel R., Malygin, Alexey A.
Publicado 2023

Human ribosomal protein S13 regulates expression of its own gene at the splicing step by a feedback mechanism

por Malygin, Alexey A., Parakhnevitch, Natalia M., Ivanov, Anton V., Eperon, Ian C., Karpova, Galina G.
Publicado 2007

Design principles for bifunctional targeted oligonucleotide enhancers of splicing

por Owen, Nicholas, Zhou, Haiyan, Malygin, Alexey A., Sangha, Jason, Smith, Lindsay D., Muntoni, Francesco, Eperon, Ian C.
Publicado 2011

Chemical footprinting reveals conformational changes of 18S and 28S rRNAs at different steps of translation termination on the human ribosome

por Bulygin, Konstantin N., Bartuli, Yulia S., Malygin, Alexey A., Graifer, Dmitri M., Frolova, Ludmila Yu., Karpova, Galina G.
Publicado 2016

Deficiency of the Ribosomal Protein uL5 Leads to Significant Rearrangements of the Transcriptional and Translational Landscapes in Mammalian Cells

por Babaylova, Elena S., Gopanenko, Alexander V., Tupikin, Alexey E., Kabilov, Marsel R., Malygin, Alexey A., Karpova, Galina G.
Publicado 2021

Human ribosomal protein eS1 is engaged in cellular events related to processing and functioning of U11 snRNA

por Gopanenko, Alexander V., Malygin, Alexey A., Tupikin, Alexey E., Laktionov, Pavel P., Kabilov, Marsel R., Karpova, Galina G.
Publicado 2017

Knockdown of the Ribosomal Protein eL38 in HEK293 Cells Changes the Translational Efficiency of Specific Genes

por Gopanenko, Alexander V., Kolobova, Alena V., Tupikin, Alexey E., Kabilov, Marsel R., Malygin, Alexey A., Karpova, Galina G.
Publicado 2021

Changes in the Transcriptome Caused by Mutations in the Ribosomal Protein uS10 Associated with a Predisposition to Colorectal Cancer

por Tian, Yueming, Babaylova, Elena S., Gopanenko, Alexander V., Tupikin, Alexey E., Kabilov, Marsel R., Malygin, Alexey A., Karpova, Galina G.
Publicado 2022

mRNA regions where 80S ribosomes pause during translation elongation in vivo interact with protein uS19, a component of the decoding site

por Babaylova, Elena S, Gopanenko, Alexander V, Bulygin, Konstantin N, Tupikin, Alexey E, Kabilov, Marsel R, Malygin, Alexey A, Karpova, Galina G
Publicado 2020

Reorganization of the Landscape of Translated mRNAs in NSUN2-Deficient Cells and Specific Features of NSUN2 Target mRNAs

por Kossinova, Olga A., Gopanenko, Alexander V., Babaylova, Elena S., Tupikin, Alexey E., Kabilov, Marsel R., Malygin, Alexey A., Karpova, Galina G.
Publicado 2022

Knockdown of the Ribosomal Protein eL29 in Mammalian Cells Leads to Significant Changes in Gene Expression at the Transcription Level

por Gopanenko, Alexander V., Kolobova, Alena V., Meschaninova, Maria I., Venyaminova, Alya G., Tupikin, Alexey E., Kabilov, Marsel R., Malygin, Alexey A., Karpova, Galina G.
Publicado 2020

Complementary-addressed site-directed spin labeling of long natural RNAs

por Babaylova, Elena S., Malygin, Alexey A., Lomzov, Alexander A., Pyshnyi, Dmitrii V., Yulikov, Maxim, Jeschke, Gunnar, Krumkacheva, Olesya A., Fedin, Matvey V., Karpova, Galina G., Bagryanskaya, Elena G.
Publicado 2016

A Targeted Oligonucleotide Enhancer of SMN2 Exon 7 Splicing Forms Competing Quadruplex and Protein Complexes in Functional Conditions

por Smith, Lindsay D., Dickinson, Rachel L., Lucas, Christian M., Cousins, Alex, Malygin, Alexey A., Weldon, Carika, Perrett, Andrew J., Bottrill, Andrew R., Searle, Mark S., Burley, Glenn A., Eperon, Ian C.
Publicado 2014

Structural rearrangements in mRNA upon its binding to human 80S ribosomes revealed by EPR spectroscopy

por Malygin, Alexey A, Graifer, Dmitri M, Meschaninova, Maria I, Venyaminova, Alya G, Timofeev, Ivan O, Kuzhelev, Andrey A, Krumkacheva, Olesya A, Fedin, Matvey V, Karpova, Galina G, Bagryanskaya, Elena G
Publicado 2018

Exploring the interactions of short RNAs with the human 40S ribosomal subunit near the mRNA entry site by EPR spectroscopy

por Malygin, Alexey A, Krumkacheva, Olesya A, Graifer, Dmitri M, Timofeev, Ivan O, Ochkasova, Anastasia S, Meschaninova, Maria I, Venyaminova, Alya G, Fedin, Matvey V, Bowman, Michael, Karpova, Galina G, Bagryanskaya, Elena G
Publicado 2019

Two alternative conformations of mRNA in the human ribosome during elongation and termination of translation as revealed by EPR spectroscopy

por Bulygin, Konstantin N., Timofeev, Ivan O., Malygin, Alexey A., Graifer, Dmitri M., Meschaninova, Maria I., Venyaminova, Alya G., Krumkacheva, Olesya A., Fedin, Matvey V., Yu. Frolova, Ludmila, Karpova, Galina G., Bagryanskaya, Elena G.
Publicado 2021