Improving the usability and archival stability of bioinformatics software

por Mangul, Serghei, Martin, Lana S., Eskin, Eleazar, Blekhman, Ran
Publicado 2019

TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles

por Sarwal, Varuni, Brito, Jaqueline, Mangul, Serghei, Koslicki, David
Publicado 2023

Hidden treasures in contemporary RNA sequencing

por Mangul, Serghei, Yang, Harry Taegyun, Eskin, Eleazar, Zaitlen, Noah
Publicado 2019

Estimation of alternative splicing isoform frequencies from RNA-Seq data

por Nicolae, Marius, Mangul, Serghei, Măndoiu, Ion I, Zelikovsky, Alex
Publicado 2011

Response to ‘comment on rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing’ by Davydov A.N.; Bolotin D.A.; Poslavsky S. V. and Chudakov...

por Huang, Yu-Ning, Vahed, Mohammad, Peng, Kerui, Alachkar, Houda, Mangul, Serghei
Publicado 2023

TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads

por Mangul, Serghei, Caciula, Adrian, Brinza, Dumitru, Mandoiu, Ion I, Zelikovsky, Alex
Publicado 2012

Metalign: efficient alignment-based metagenomic profiling via containment min hash

por LaPierre, Nathan, Alser, Mohammed, Eskin, Eleazar, Koslicki, David, Mangul, Serghei
Publicado 2020

Improving the usability and comprehensiveness of microbial databases

por Loeffler, Caitlin, Karlsberg, Aaron, Martin, Lana S., Eskin, Eleazar, Koslicki, David, Mangul, Serghei
Publicado 2020

Correction to: Improving the usability and comprehensiveness of microbial databases

por Loeffler, Caitlin, Karlsberg, Aaron, Martin, Lana S., Eskin, Eleazar, Koslicki, David, Mangul, Serghei
Publicado 2020

Accurate viral population assembly from ultra-deep sequencing data

por Mangul, Serghei, Wu, Nicholas C., Mancuso, Nicholas, Zelikovsky, Alex, Sun, Ren, Eskin, Eleazar
Publicado 2014

Inferring viral quasispecies spectra from 454 pyrosequencing reads

por Astrovskaya, Irina, Tork, Bassam, Mangul, Serghei, Westbrooks, Kelly, Măndoiu, Ion, Balfe, Peter, Zelikovsky, Alex
Publicado 2011

Improving the completeness of public metadata accompanying omics studies

por Rajesh, Anushka, Chang, Yutong, Abedalthagafi, Malak S., Wong-Beringer, Annie, Love, Michael I., Mangul, Serghei
Publicado 2021

The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe

por Oleksyk, Taras K, Wolfsberger, Walter W, Schubelka, Khrystyna, Mangul, Serghei, O'Brien, Stephen J
Publicado 2022

Transcriptome assembly and quantification from Ion Torrent RNA-Seq data

por Mangul, Serghei, Caciula, Adrian, Al Seesi, Sahar, Brinza, Dumitru, Mӑndoiu, Ion, Zelikovsky, Alex
Publicado 2014

MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples

por LaPierre, Nathan, Mangul, Serghei, Alser, Mohammed, Mandric, Igor, Wu, Nicholas C., Koslicki, David, Eskin, Eleazar
Publicado 2019

PUMAA: A Platform for Accessible Microbiome Analysis in the Undergraduate Classroom

por Mitchell, Keith, Ronas, Jiem, Dao, Christopher, Freise, Amanda C., Mangul, Serghei, Shapiro, Casey, Moberg Parker, Jordan
Publicado 2020

Spatial Analysis of Single Fiber Cells of the Developing Ocular Lens Reveals Regulated Heterogeneity of Gene Expression

por Gangalum, Rajendra K., Kim, Dongjae, Kashyap, Raj K., Mangul, Serghei, Zhou, Xinkai, Elashoff, David, Bhat, Suraj P.
Publicado 2018

Transcriptional profiling of single fiber cells in a transgenic paradigm of an inherited childhood cataract reveals absence of molecular heterogeneity

por Bhat, Suraj P., Gangalum, Rajendra K., Kim, Dongjae, Mangul, Serghei, Kashyap, Raj K., Zhou, Xinkai, Elashoff, David
Publicado 2019

pyTCR: A comprehensive and scalable solution for TCR-Seq data analysis to facilitate reproducibility and rigor of immunogenomics research

por Peng, Kerui, Moore, Jaden, Vahed, Mohammad, Brito, Jaqueline, Kao, Guoyun, Burkhardt, Amanda M., Alachkar, Houda, Mangul, Serghei
Publicado 2022

Recommendations to enhance rigor and reproducibility in biomedical research

por Brito, Jaqueline J, Li, Jun, Moore, Jason H, Greene, Casey S, Nogoy, Nicole A, Garmire, Lana X, Mangul, Serghei
Publicado 2020