Deep learning integrates histopathology and proteogenomics at a pan-cancer level

por Wang, Joshua M., Hong, Runyu, Demicco, Elizabeth G., Tan, Jimin, Lazcano, Rossana, Moreira, Andre L., Li, Yize, Calinawan, Anna, Razavian, Narges, Schraink, Tobias, Gillette, Michael A., Omenn, Gilbert S., An, Eunkyung, Rodriguez, Henry, Tsirigos, Aristotelis, Ruggles, Kelly V., Ding, Li, Robles, Ana I., Mani, D.R., Rodland, Karin D., Lazar, Alexander J., Liu, Wenke, Fenyö, David
Publicado 2023

Lenalidomide induces ubiquitination and degradation of CK1α in del(5q) MDS

por Krönke, Jan, Fink, Emma C., Hollenbach, Paul W., MacBeth, Kyle J., Hurst, Slater N., Udeshi, Namrata D., Chamberlain, Philip P., Mani, D.R., Man, Hon Wah, Gandhi, Anita K., Svinkina, Tanya, Schneider, Rebekka K., McConkey, Marie, Järås, Marcus, Griffiths, Elizabeth, Wetzler, Meir, Bullinger, Lars, Cathers, Brian E., Carr, Steven A., Chopra, Rajesh, Ebert, Benjamin L.
Publicado 2015

A highly multiplexed quantitative phosphosite assay for biology and preclinical studies

por Keshishian, Hasmik, McDonald, E Robert, Mundt, Filip, Melanson, Randy, Krug, Karsten, Porter, Dale A, Wallace, Luke, Forestier, Dominique, Rabasha, Bokang, Marlow, Sara E, Jane‐Valbuena, Judit, Todres, Ellen, Specht, Harrison, Robinson, Margaret Lea, Jean Beltran, Pierre M, Babur, Ozgun, Olive, Meagan E, Golji, Javad, Kuhn, Eric, Burgess, Michael, MacMullan, Melanie A, Rejtar, Tomas, Wang, Karen, Mani, DR, Satpathy, Shankha, Gillette, Michael A, Sellers, William R, Carr, Steven A
Publicado 2021

Proteogenomic Markers of Chemotherapy Resistance and Response in Triple-Negative Breast Cancer

por Anurag, Meenakshi, Jaehnig, Eric J., Krug, Karsten, Lei, Jonathan T., Bergstrom, Erik J., Kim, Beom-Jun, Vashist, Tanmayi D., Huynh, Anh Minh Tran, Dou, Yongchao, Gou, Xuxu, Huang, Chen, Shi, Zhiao, Wen, Bo, Korchina, Viktoriya, Gibbs, Richard A., Muzny, Donna M., Doddapaneni, Harshavardhan, Dobrolecki, Lacey E., Rodriguez, Henry, Robles, Ana I., Hiltke, Tara, Lewis, Michael T., Nangia, Julie R., Nemati Shafaee, Maryam, Li, Shunqiang, Hagemann, Ian S., Hoog, Jeremy, Lim, Bora, Osborne, C. Kent, Mani, D.R., Gillette, Michael A., Zhang, Bing, Echeverria, Gloria V., Miles, George, Rimawi, Mothaffar F., Carr, Steven A., Ademuyiwa, Foluso O., Satpathy, Shankha, Ellis, Matthew J.
Publicado 2022

Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach

por Carr, Steven A., Abbatiello, Susan E., Ackermann, Bradley L., Borchers, Christoph, Domon, Bruno, Deutsch, Eric W., Grant, Russell P., Hoofnagle, Andrew N., Hüttenhain, Ruth, Koomen, John M., Liebler, Daniel C., Liu, Tao, MacLean, Brendan, Mani, DR, Mansfield, Elizabeth, Neubert, Hendrik, Paulovich, Amanda G., Reiter, Lukas, Vitek, Olga, Aebersold, Ruedi, Anderson, Leigh, Bethem, Robert, Blonder, Josip, Boja, Emily, Botelho, Julianne, Boyne, Michael, Bradshaw, Ralph A., Burlingame, Alma L., Chan, Daniel, Keshishian, Hasmik, Kuhn, Eric, Kinsinger, Christopher, Lee, Jerry S.H., Lee, Sang-Won, Moritz, Robert, Oses-Prieto, Juan, Rifai, Nader, Ritchie, James, Rodriguez, Henry, Srinivas, Pothur R., Townsend, R. Reid, Van Eyk, Jennifer, Whiteley, Gordon, Wiita, Arun, Weintraub, Susan
Publicado 2014

Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy

por Krug, Karsten, Jaehnig, Eric J., Satpathy, Shankha, Blumenberg, Lili, Karpova, Alla, Anurag, Meenakshi, Miles, George, Mertins, Philipp, Geffen, Yifat, Tang, Lauren C., Heiman, David I., Cao, Song, Maruvka, Yosef E., Lei, Jonathan T., Huang, Chen, Kothadia, Ramani B., Colaprico, Antonio, Birger, Chet, Wang, Jarey, Dou, Yongchao, Wen, Bo, Shi, Zhiao, Liao, Yuxing, Wiznerowicz, Maciej, Wyczalkowski, Matthew A., Chen, Xi Steven, Kennedy, Jacob J., Paulovich, Amanda G., Thiagarajan, Mathangi, Kinsinger, Christopher R., Hiltke, Tara, Boja, Emily S., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Westbrook, Thomas F., Ding, Li, Getz, Gad, Clauser, Karl R., Fenyö, David, Ruggles, Kelly V., Zhang, Bing, Mani, D.R., Carr, Steven A., Ellis, Matthew J., Gillette, Michael A.
Publicado 2020