Amyotrophic Lateral Sclerosis associated FUS mutation shortens mitochondria and induces neurotoxicity

por Nakaya, Tadashi, Maragkakis, Manolis
Publicado 2018

SamQL: a structured query language and filtering tool for the SAM/BAM file format

por Lee, Christopher T., Maragkakis, Manolis
Publicado 2021

CLIPSeqTools—a novel bioinformatics CLIP-seq analysis suite

por Maragkakis, Manolis, Alexiou, Panagiotis, Nakaya, Tadashi, Mourelatos, Zissimos
Publicado 2016

Kc167, a widely used Drosophila cell line, contains an active primary piRNA pathway

por Vrettos, Nicholas, Maragkakis, Manolis, Alexiou, Panagiotis, Mourelatos, Zissimos
Publicado 2017

Ribothrypsis, a novel process of canonical mRNA decay, mediates ribosome-phased mRNA endonucleolysis

por Ibrahim, Fadia, Maragkakis, Manolis, Alexiou, Panagiotis, Mourelatos, Zissimos
Publicado 2018

TERA-Seq: true end-to-end sequencing of native RNA molecules for transcriptome characterization

por Ibrahim, Fadia, Oppelt, Jan, Maragkakis, Manolis, Mourelatos, Zissimos
Publicado 2021

Sequence-dependent but not sequence-specific piRNA adhesion traps mRNAs to the germ plasm

por Vourekas, Anastassios, Alexiou, Panagiotis, Vrettos, Nicholas, Maragkakis, Manolis, Mourelatos, Zissimos
Publicado 2016

Accurate microRNA Target Prediction Using Detailed Binding Site Accessibility and Machine Learning on Proteomics Data

por Reczko, Martin, Maragkakis, Manolis, Alexiou, Panagiotis, Papadopoulos, Giorgio L., Hatzigeorgiou, Artemis G.
Publicado 2012

Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

por Martinek, Vlastimil, Martin, Jessica, Belair, Cedric, Payea, Matthew J, Malla, Sulochan, Alexiou, Panagiotis, Maragkakis, Manolis
Publicado 2023

The DIANA-mirExTra Web Server: From Gene Expression Data to MicroRNA Function

por Alexiou, Panagiotis, Maragkakis, Manolis, Papadopoulos, Giorgio L., Simmosis, Victor A., Zhang, Lin, Hatzigeorgiou, Artemis G.
Publicado 2010

Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis

por Vourekas, Anastassios, Zheng, Qi, Alexiou, Panagiotis, Maragkakis, Manolis, Kirino, Yohei, Gregory, Brian D., Mourelatos, Zissimos
Publicado 2012

Mitochondrial protein BmPAPI modulates the length of mature piRNAs

por Honda, Shozo, Kirino, Yoriko, Maragkakis, Manolis, Alexiou, Panagiotis, Ohtaki, Akashi, Murali, Ramachandran, Mourelatos, Zissimos, Kirino, Yohei
Publicado 2013

Modulation of Aub–TDRD interactions elucidates piRNA amplification and germplasm formation

por Vrettos, Nicholas, Maragkakis, Manolis, Alexiou, Panagiotis, Sgourdou, Paraskevi, Ibrahim, Fadia, Palmieri, Daniel, Kirino, Yohei, Mourelatos, Zissimos
Publicado 2020

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs

por Paraskevopoulou, Maria D., Georgakilas, Georgios, Kostoulas, Nikos, Reczko, Martin, Maragkakis, Manolis, Dalamagas, Theodore M., Hatzigeorgiou, Artemis G.
Publicado 2013

The RNA helicase MOV10L1 binds piRNA precursors to initiate piRNA processing

por Vourekas, Anastassios, Zheng, Ke, Fu, Qi, Maragkakis, Manolis, Alexiou, Panagiotis, Ma, Jing, Pillai, Ramesh S., Mourelatos, Zissimos, Wang, P. Jeremy
Publicado 2015

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association

por Maragkakis, Manolis, Vergoulis, Thanasis, Alexiou, Panagiotis, Reczko, Martin, Plomaritou, Kyriaki, Gousis, Mixail, Kourtis, Kornilios, Koziris, Nectarios, Dalamagas, Theodore, Hatzigeorgiou, Artemis G.
Publicado 2011

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

por Vergoulis, Thanasis, Vlachos, Ioannis S., Alexiou, Panagiotis, Georgakilas, George, Maragkakis, Manolis, Reczko, Martin, Gerangelos, Stefanos, Koziris, Nectarios, Dalamagas, Theodore, Hatzigeorgiou, Artemis G.
Publicado 2012

The MOV10 RNA helicase is a dosage-dependent host restriction factor for LINE1 retrotransposition in mice

por Guan, Yongjuan, Gao, Hongyan, Leu, N. Adrian, Vourekas, Anastassios, Alexiou, Panagiotis, Maragkakis, Manolis, Kang, Zhenlong, Mourelatos, Zissimos, Liang, Guanxiang, Wang, P. Jeremy
Publicado 2023

Full-length direct RNA sequencing reveals widespread RNA decay upon cellular stress

por Dar, Showkat A., Malla, Sulochan, Lee, Christopher T., Payea, Matthew J., Martin, Jessica, Khandeshi, Aditya J., Martindale, Jennifer L., Belair, Cedric, Maragkakis, Manolis
Publicado 2023

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways

por Vlachos, Ioannis S., Kostoulas, Nikos, Vergoulis, Thanasis, Georgakilas, Georgios, Reczko, Martin, Maragkakis, Manolis, Paraskevopoulou, Maria D., Prionidis, Kostantinos, Dalamagas, Theodore, Hatzigeorgiou, Artemis G.
Publicado 2012