Computational Analysis of Maize Enhancer Regulatory Elements Using ATAC-STARR-seq

por Marand, Alexandre P.
Publicado 2023

PlantDHS: a database for DNase I hypersensitive sites in plants

por Zhang, Tao, Marand, Alexandre P., Jiang, Jiming
Publicado 2016

Massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing

por Zhang, Xuan, Marand, Alexandre P, Yan, Haidong, Schmitz, Robert J
Publicado 2023

A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells

por Tu, Xiaoyu, Marand, Alexandre P., Schmitz, Robert J., Zhong, Silin
Publicado 2022

Cold stress induces enhanced chromatin accessibility and bivalent histone modifications H3K4me3 and H3K27me3 of active genes in potato

por Zeng, Zixian, Zhang, Wenli, Marand, Alexandre P., Zhu, Bo, Buell, C. Robin, Jiang, Jiming
Publicado 2019

Leveraging histone modifications to improve genome annotations

por Mendieta, John Pablo, Marand, Alexandre P, Ricci, William A, Zhang, Xuan, Schmitz, Robert J
Publicado 2021

Profiling single-cell chromatin accessibility in plants

por Marand, Alexandre P., Zhang, Xuan, Nelson, Julie, Braga dos Reis, Pedro Augusto, Schmitz, Robert J.
Publicado 2021

Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes

por Kieft, Rudo, Zhang, Yang, Marand, Alexandre P., Moran, Jose Dagoberto, Bridger, Robert, Wells, Lance, Schmitz, Robert J., Sabatini, Robert
Publicado 2020

Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes

por Noshay, Jaclyn M, Liang, Zhikai, Zhou, Peng, Crisp, Peter A, Marand, Alexandre P, Hirsch, Candice N, Schmitz, Robert J, Springer, Nathan M
Publicado 2021

Quality control and evaluation of plant epigenomics data

por Schmitz, Robert J, Marand, Alexandre P, Zhang, Xuan, Mosher, Rebecca A, Turck, Franziska, Chen, Xuemei, Axtell, Michael J, Zhong, Xuehua, Brady, Siobhan M, Megraw, Molly, Meyers, Blake C
Publicado 2021

Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato

por Marand, Alexandre P., Jansky, Shelley H., Zhao, Hainan, Leisner, Courtney P., Zhu, Xiaobiao, Zeng, Zixian, Crisovan, Emily, Newton, Linsey, Hamernik, Andy J., Veilleux, Richard E., Buell, C. Robin, Jiang, Jiming
Publicado 2017

Widespread Long-range Cis-Regulatory Elements in the Maize Genome

por Ricci, William A., Lu, Zefu, Ji, Lexiang, Marand, Alexandre P., Ethridge, Christina L., Murphy, Nathalie G., Noshay, Jaclyn M., Galli, Mary, Mejía-Guerra, María Katherine, Colomé-Tatché, Maria, Johannes, Frank, Rowley, M. Jordan, Corces, Victor G., Zhai, Jixian, Scanlon, Michael J., Buckler, Edward S., Gallavotti, Andrea, Springer, Nathan M., Schmitz, Robert J., Zhang, Xiaoyu
Publicado 2019