Sequence Searcher: A Java tool to perform regular expression and fuzzy searches of multiple DNA and protein sequences

por Marass, Francesco, Upton, Chris
Publicado 2009

KISSa: a strategy to build multiple sequence alignments from pairwise comparisons of very closely related sequences

por Marass, Francesco, Upton, Chris
Publicado 2009

JaPaFi: A Novel Program for the Identification of Highly Conserved DNA Sequences

por Sadeque, Aliya, Barsky, Marina, Marass, Francesco, Kruczkiewicz, Peter, Upton, Chris
Publicado 2010

CVE: an R package for interactive variant prioritisation in precision oncology

por Mock, Andreas, Murphy, Suzanne, Morris, James, Marass, Francesco, Rosenfeld, Nitzan, Massie, Charlie
Publicado 2017

BnpC: Bayesian non-parametric clustering of single-cell mutation profiles

por Borgsmüller, Nico, Bonet, Jose, Marass, Francesco, Gonzalez-Perez, Abel, Lopez-Bigas, Nuria, Beerenwinkel, Niko
Publicado 2020

Predicting tumour content of liquid biopsies from cell-free DNA

por Cardner, Mathias, Marass, Francesco, Gedvilaite, Erika, Yang, Julie L., Tsui, Dana W. Y., Beerenwinkel, Niko
Publicado 2023

A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon (Salmo salar L.)

por Jantzen, Stuart G, Sanderson, Dan S, von Schalburg, Kris R, Yasuike, Motoshige, Marass, Francesco, Koop, Ben F
Publicado 2011

Detection of cell‐free DNA fragmentation and copy number alterations in cerebrospinal fluid from glioma patients

por Mouliere, Florent, Mair, Richard, Chandrananda, Dineika, Marass, Francesco, Smith, Christopher G, Su, Jing, Morris, James, Watts, Colin, Brindle, Kevin M, Rosenfeld, Nitzan
Publicado 2018

Optimized p53 immunohistochemistry is an accurate predictor of TP53 mutation in ovarian carcinoma

por Köbel, Martin, Piskorz, Anna M, Lee, Sandra, Lui, Shuhong, LePage, Cecile, Marass, Francesco, Rosenfeld, Nitzan, Mes Masson, Anne‐Marie, Brenton, James D
Publicado 2016

Effects of Collection and Processing Procedures on Plasma Circulating Cell-Free DNA from Cancer Patients

por Risberg, Bente, Tsui, Dana W.Y., Biggs, Heather, Ruiz-Valdepenas Martin de Almagro, Andrea, Dawson, Sarah-Jane, Hodgkin, Charlotte, Jones, Linda, Parkinson, Christine, Piskorz, Anna, Marass, Francesco, Chandrananda, Dineika, Moore, Elizabeth, Morris, James, Plagnol, Vincent, Rosenfeld, Nitzan, Caldas, Carlos, Brenton, James D., Gale, Davina
Publicado 2018

Cell‐free DNA profiling in retinoblastoma patients with advanced intraocular disease: An MSKCC experience

por Kothari, Prachi, Marass, Francesco, Yang, Julie L., Stewart, Caitlin M., Stephens, Dennis, Patel, Juber, Hasan, Maysun, Jing, Xiaohong, Meng, Fanli, Enriquez, Jeanette, Huberman, Kety, Viale, Agnes, Francis, Jasmine H., Berger, Michael F., Shukla, Neerav, Abramson, David H., Dunkel, Ira J., Tsui, Dana W.Y.
Publicado 2020

Multiparametric Circulating Tumor Cell Analysis to Select Targeted Therapies for Breast Cancer Patients

por Franken, André, Behrens, Bianca, Reinhardt, Florian, Yang, Liwen, Rivandi, Mahdi, Marass, Francesco, Jaeger, Bernadette, Krawczyk, Natalia, Cieslik, Jan-Philipp, Honisch, Ellen, Asperger, Hannah, Jeannot, Emmanuelle, Proudhon, Charlotte, Beerenwinkel, Niko, Schölermann, Natali, Esposito, Irene, Dietzel, Frederic, Stoecklein, Nikolas H., Niederacher, Dieter, Fehm, Tanja, Neubauer, Hans
Publicado 2021

Dynamics of multiple resistance mechanisms in plasma DNA during EGFR‐targeted therapies in non‐small cell lung cancer

por Tsui, Dana Wai Yi, Murtaza, Muhammed, Wong, Alvin Seng Cheong, Rueda, Oscar M, Smith, Christopher G, Chandrananda, Dineika, Soo, Ross A, Lim, Hong Liang, Goh, Boon Cher, Caldas, Carlos, Forshew, Tim, Gale, Davina, Liu, Wei, Morris, James, Marass, Francesco, Eisen, Tim, Chin, Tan Min, Rosenfeld, Nitzan
Publicado 2018

Kinome capture sequencing of high-grade serous ovarian carcinoma reveals novel mutations in the JAK3 gene

por Mittempergher, Lorenza, Piskorz, Anna M., Bosma, Astrid J., Michaut, Magali, Wisman, G. Bea A., Kluin, Roelof J. C., Nieuwland, Marja, Brugman, Wim, van der Ven, Kevin J. W., Marass, Francesco, Morris, James, Rosenfeld, Nitzan, Jimenez-Linan, Mercedes, de Jong, Steven, van der Zee, Ate G. J., Brenton, James D., Bernards, René
Publicado 2020

Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer

por Murtaza, Muhammed, Dawson, Sarah-Jane, Pogrebniak, Katherine, Rueda, Oscar M., Provenzano, Elena, Grant, John, Chin, Suet-Feung, Tsui, Dana W. Y., Marass, Francesco, Gale, Davina, Ali, H. Raza, Shah, Pankti, Contente-Cuomo, Tania, Farahani, Hossein, Shumansky, Karey, Kingsbury, Zoya, Humphray, Sean, Bentley, David, Shah, Sohrab P., Wallis, Matthew, Rosenfeld, Nitzan, Caldas, Carlos
Publicado 2015

Detection of Age-Related Somatic Alterations in Canine Blood Using Next-Generation Sequencing-Based Liquid Biopsy: An Analysis of over 4800 Dogs

por Kruglyak, Kristina M., O’Kell, Allison L., Cohen, Todd A., Marshall, Maggie A., Ruiz-Perez, Carlos A., Marass, Francesco, Tynan, John A., Hicks, Susan C., Lytle, Katherine M., Phelps-Dunn, Ashley, Brandstetter, Gina, Warren, Chelsea D., DiMarzio, Lauren R., Rosentel, Michelle C., Wong, Lilian K., McLennan, Lisa M., Rafalko, Jill M., Grosu, Daniel S., Chibuk, Jason, Chorny, Ilya, McCleary-Wheeler, Angela L., Flory, Andi, Tsui, Dana W. Y.
Publicado 2023

Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer

por Hong, Matthew K.H., Macintyre, Geoff, Wedge, David C., Van Loo, Peter, Patel, Keval, Lunke, Sebastian, Alexandrov, Ludmil B., Sloggett, Clare, Cmero, Marek, Marass, Francesco, Tsui, Dana, Mangiola, Stefano, Lonie, Andrew, Naeem, Haroon, Sapre, Nikhil, Phal, Pramit M., Kurganovs, Natalie, Chin, Xiaowen, Kerger, Michael, Warren, Anne Y., Neal, David, Gnanapragasam, Vincent, Rosenfeld, Nitzan, Pedersen, John S., Ryan, Andrew, Haviv, Izhak, Costello, Anthony J., Corcoran, Niall M., Hovens, Christopher M.
Publicado 2015

Clinical validation of a next-generation sequencing-based multi-cancer early detection “liquid biopsy” blood test in over 1,000 dogs using an independent testing set: The CANcer De...

por Flory, Andi, Kruglyak, Kristina M., Tynan, John A., McLennan, Lisa M., Rafalko, Jill M., Fiaux, Patrick Christian, Hernandez, Gilberto E., Marass, Francesco, Nakashe, Prachi, Ruiz-Perez, Carlos A., Fath, Donna M., Jennings, Thuy, Motalli-Pepio, Rita, Wotrang, Kate, McCleary-Wheeler, Angela L., Lana, Susan, Phillips, Brenda, Flesner, Brian K., Leibman, Nicole F., LaDue, Tracy, Tripp, Chelsea D., Coomber, Brenda L., Woods, J. Paul, Miller, Mairin, Aiken, Sean W., Wolf-Ringwall, Amber, Borgatti, Antonella, Kraska, Kathleen, Thomson, Christopher B., Kosanovich Cahalane, Alane, Murray, Rebecca L., Kisseberth, William C., Camps-Palau, Maria A., Floch, Franck, Beaudu-Lange, Claire, Klajer-Peres, Aurélia, Keravel, Olivier, Fribourg-Blanc, Luc-André, Mazetier, Pascale Chicha, Marco, Angelo, McLeod, Molly B., Portillo, Erin, Clark, Terry S., Judd, Scott, Feinberg, C. Kirk, Benitez, Marie, Runyan, Candace, Hackett, Lindsey, Lafey, Scott, Richardson, Danielle, Vineyard, Sarah, Tefend Campbell, Mary, Dharajiya, Nilesh, Jensen, Taylor J., van den Boom, Dirk, Diaz, Luis A., Grosu, Daniel S., Polk, Arthur, Marsal, Kalle, Hicks, Susan Cho, Lytle, Katherine M., Holtvoigt, Lauren, Chibuk, Jason, Chorny, Ilya, Tsui, Dana W. Y.
Publicado 2022