Influence of single-cell RNA sequencing data integration on the performance of differential gene expression analysis

por Kujawa, Tomasz, Marczyk, Michał, Polanska, Joanna
Publicado 2022

Adaptive filtering of microarray gene expression data based on Gaussian mixture decomposition

por Marczyk, Michal, Jaksik, Roman, Polanski, Andrzej, Polanska, Joanna
Publicado 2013

Ranking metrics in gene set enrichment analysis: do they matter?

por Zyla, Joanna, Marczyk, Michal, Weiner, January, Polanska, Joanna
Publicado 2017

BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm

por Papiez, Anna, Marczyk, Michal, Polanska, Joanna, Polanski, Andrzej
Publicado 2019

Analysis of the Applicability of microRNAs in Peripheral Blood Leukocytes as Biomarkers of Sensitivity and Exposure to Fractionated Radiotherapy towards Breast Cancer

por Marczyk, Michal, Polańska, Joanna, Wojcik, Andrzej, Lundholm, Lovisa
Publicado 2021

Quantifying Spatial Heterogeneity of Tumor-Infiltrating Lymphocytes to Predict Survival of Individual Cancer Patients

por Suwalska, Aleksandra, Zientek, Lukasz, Polanska, Joanna, Marczyk, Michal
Publicado 2022

Sources of High Variance between Probe Signals in Affymetrix Short Oligonucleotide Microarrays

por Jaksik, Roman, Marczyk, Michal, Polanska, Joanna, Rzeszowska-Wolny, Joanna
Publicado 2013

Signal Partitioning Algorithm for Highly Efficient Gaussian Mixture Modeling in Mass Spectrometry

por Polanski, Andrzej, Marczyk, Michal, Pietrowska, Monika, Widlak, Piotr, Polanska, Joanna
Publicado 2015

Importance of SNP Dependency Correction and Association Integration for Gene Set Analysis in Genome-Wide Association Studies

por Marczyk, Michal, Macioszek, Agnieszka, Tobiasz, Joanna, Polanska, Joanna, Zyla, Joanna
Publicado 2021

Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms

por Zyla, Joanna, Marczyk, Michal, Domaszewska, Teresa, Kaufmann, Stefan H E, Polanska, Joanna, Weiner, January
Publicado 2019

Treatment scheduling effects on the evolution of drug resistance in heterogeneous cancer cell populations

por Patwardhan, Gauri A., Marczyk, Michal, Wali, Vikram B., Stern, David F., Pusztai, Lajos, Hatzis, Christos
Publicado 2021

Diverse immune response of DNA damage repair-deficient tumors

por Qing, Tao, Jun, Tomi, Lindblad, Katherine E., Lujambio, Amaia, Marczyk, Michal, Pusztai, Lajos, Huang, Kuan-lin
Publicado 2021

Evaluation of zero counts to better understand the discrepancies between bulk and single-cell RNA-Seq platforms

por Zyla, Joanna, Papiez, Anna, Zhao, Jun, Qu, Rihao, Li, Xiaotong, Kluger, Yuval, Polanska, Joanna, Hatzis, Christos, Pusztai, Lajos, Marczyk, Michal
Publicado 2023

Immunological Differences Between Immune-Rich Estrogen Receptor–Positive and Immune-Rich Triple-Negative Breast Cancers

por O’Meara, Tess, Marczyk, Michal, Qing, Tao, Yaghoobi, Vesal, Blenman, Kim, Cole, Kimberly, Pelekanou, Vasiliki, Rimm, David L., Pusztai, Lajos
Publicado 2020

Radiation-Induced Changes in Serum Lipidome of Head and Neck Cancer Patients

por Jelonek, Karol, Pietrowska, Monika, Ros, Malgorzata, Zagdanski, Adam, Suchwalko, Agnieszka, Polanska, Joanna, Marczyk, Michal, Rutkowski, Tomasz, Skladowski, Krzysztof, Clench, Malcolm R., Widlak, Piotr
Publicado 2014

The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues

por Marczyk, Michal, Fu, Chunxiao, Lau, Rosanna, Du, Lili, Trevarton, Alexander J., Sinn, Bruno V., Gould, Rebekah E., Pusztai, Lajos, Hatzis, Christos, Symmans, W. Fraser
Publicado 2019

Germline variant burden in cancer genes correlates with age at diagnosis and somatic mutation burden

por Qing, Tao, Mohsen, Hussein, Marczyk, Michal, Ye, Yixuan, O’Meara, Tess, Zhao, Hongyu, Townsend, Jeffrey P., Gerstein, Mark, Hatzis, Christos, Kluger, Yuval, Pusztai, Lajos
Publicado 2020

Molecular differences between younger versus older ER-positive and HER2-negative breast cancers

por Qing, Tao, Karn, Thomas, Rozenblit, Mariya, Foldi, Julia, Marczyk, Michal, Shan, Naing Lin, Blenman, Kim, Holtrich, Uwe, Kalinsky, Kevin, Meric-Bernstam, Funda, Pusztai, Lajos
Publicado 2022

Prognostic value of 5-microRNA based signature in T2-T3N0 colon cancer

por Bobowicz, Maciej, Skrzypski, Marcin, Czapiewski, Piotr, Marczyk, Michał, Maciejewska, Agnieszka, Jankowski, Michał, Szulgo-Paczkowska, Anna, Zegarski, Wojciech, Pawłowski, Ryszard, Polańska, Joanna, Biernat, Wojciech, Jaśkiewicz, Janusz, Jassem, Jacek
Publicado 2016

Multi-Omics Investigation of Innate Navitoclax Resistance in Triple-Negative Breast Cancer Cells

por Marczyk, Michal, Patwardhan, Gauri A., Zhao, Jun, Qu, Rihao, Li, Xiaotong, Wali, Vikram B., Gupta, Abhishek K., Pillai, Manoj M., Kluger, Yuval, Yan, Qin, Hatzis, Christos, Pusztai, Lajos, Gunasekharan, Vignesh
Publicado 2020