MkVsites: A tool for creating GROMACS virtual sites parameters to increase performance in all‐atom molecular dynamics simulations

por Larsson, Per, Kneiszl, Rosita C., Marklund, Erik G.
Publicado 2020

Rehydration Post-orientation: Investigating Field-Induced Structural Changes via Computational Rehydration

por Brodmerkel, Maxim N., De Santis, Emiliano, Caleman, Carl, Marklund, Erik G.
Publicado 2023

A strategy for the identification of protein architectures directly from ion mobility mass spectrometry data reveals stabilizing subunit interactions in light harvesting complexes

por Kaldmäe, Margit, Sahin, Cagla, Saluri, Mihkel, Marklund, Erik G., Landreh, Michael
Publicado 2019

Effects of Detergent Micelles on Lipid Binding to Proteins in Electrospray Ionization Mass Spectrometry

por Landreh, Michael, Costeira-Paulo, Joana, Gault, Joseph, Marklund, Erik G., Robinson, Carol V.
Publicado 2017

Structural and functional aspects of the interaction partners of the small heat-shock protein in Synechocystis

por Marklund, Erik G., Zhang, Yichen, Basha, Eman, Benesch, Justin L. P., Vierling, Elizabeth
Publicado 2018

Stability and conformational memory of electrosprayed and rehydrated bacteriophage MS2 virus coat proteins

por Brodmerkel, Maxim N., De Santis, Emiliano, Uetrecht, Charlotte, Caleman, Carl, Marklund, Erik G.
Publicado 2022

Reproducibility in the unfolding process of protein induced by an external electric field

por Sinelnikova, Anna, Mandl, Thomas, Östlin, Christofer, Grånäs, Oscar, Brodmerkel, Maxim N., Marklund, Erik G., Caleman, Carl
Publicado 2020

Protein orientation in time-dependent electric fields: orientation before destruction

por Sinelnikova, Anna, Mandl, Thomas, Agelii, Harald, Grånäs, Oscar, Marklund, Erik G., Caleman, Carl, De Santis, Emiliano
Publicado 2021

Mass spectrometry captures structural intermediates in protein fiber self-assembly

por Landreh, Michael, Andersson, Marlene, Marklund, Erik G., Jia, Qiupin, Meng, Qing, Johansson, Jan, Robinson, Carol V., Rising, Anna
Publicado 2017

A hydrophobic ratchet entrenches molecular complexes

por Hochberg, Georg K.A., Liu, Yang, Marklund, Erik G., Metzger, Brian P. H., Laganowsky, Arthur, Thornton, Joseph W.
Publicado 2020

Complementing machine learning‐based structure predictions with native mass spectrometry

por Allison, Timothy M., Degiacomi, Matteo T., Marklund, Erik G., Jovine, Luca, Elofsson, Arne, Benesch, Justin L. P., Landreh, Michael
Publicado 2022

Structural Heterogeneity in Single Particle Imaging Using X-ray Lasers

por Mandl, Thomas, Östlin, Christofer, Dawod, Ibrahim E., Brodmerkel, Maxim N., Marklund, Erik G., Martin, Andrew V., Timneanu, Nicusor, Caleman, Carl
Publicado 2020

Glycan-Induced Protein Dynamics in Human Norovirus P Dimers Depend on Virus Strain and Deamidation Status

por Dülfer, Jasmin, Yan, Hao, Brodmerkel, Maxim N., Creutznacher, Robert, Mallagaray, Alvaro, Peters, Thomas, Caleman, Carl, Marklund, Erik G., Uetrecht, Charlotte
Publicado 2021

Liquid–Liquid Phase Separation Primes Spider Silk Proteins for Fiber Formation via a Conditional Sticker Domain

por Leppert, Axel, Chen, Gefei, Lama, Dilraj, Sahin, Cagla, Railaite, Vaida, Shilkova, Olga, Arndt, Tina, Marklund, Erik G., Lane, David P., Rising, Anna, Landreh, Michael
Publicado 2023

Mass Spectrometry and Machine Learning Reveal Determinants of Client Recognition by Antiamyloid Chaperones

por Österlund, Nicklas, Vosselman, Thibault, Leppert, Axel, Gräslund, Astrid, Jörnvall, Hans, Ilag, Leopold L., Marklund, Erik G., Elofsson, Arne, Johansson, Jan, Sahin, Cagla, Landreh, Michael
Publicado 2022

Gas-Phase Collisions with Trimethylamine-N-Oxide Enable Activation-Controlled Protein Ion Charge Reduction

por Kaldmäe, Margit, Österlund, Nicklas, Lianoudaki, Danai, Sahin, Cagla, Bergman, Peter, Nyman, Tomas, Kronqvist, Nina, Ilag, Leopold L., Allison, Timothy M., Marklund, Erik G., Landreh, Michael
Publicado 2019

Integrating mass spectrometry with MD simulations reveals the role of lipids in Na(+)/H(+) antiporters

por Landreh, Michael, Marklund, Erik G., Uzdavinys, Povilas, Degiacomi, Matteo T., Coincon, Mathieu, Gault, Joseph, Gupta, Kallol, Liko, Idlir, Benesch, Justin L. P., Drew, David, Robinson, Carol V.
Publicado 2017

Lipids Shape the Electron Acceptor-Binding Site of the Peripheral Membrane Protein Dihydroorotate Dehydrogenase

por Costeira-Paulo, Joana, Gault, Joseph, Popova, Gergana, Ladds, Marcus J.G.W., van Leeuwen, Ingeborg M.M., Sarr, Médoune, Olsson, Anders, Lane, David P., Laín, Sonia, Marklund, Erik G., Landreh, Michael
Publicado 2018

Mass Spectrometry of RNA-Binding Proteins during Liquid–Liquid Phase Separation Reveals Distinct Assembly Mechanisms and Droplet Architectures

por Sahin, Cagla, Motso, Aikaterini, Gu, Xinyu, Feyrer, Hannes, Lama, Dilraj, Arndt, Tina, Rising, Anna, Gese, Genis Valentin, Hällberg, B. Martin, Marklund, Erik. G., Schafer, Nicholas P., Petzold, Katja, Teilum, Kaare, Wolynes, Peter G., Landreh, Michael
Publicado 2023

Electrospray ionization of native membrane proteins proceeds via a charge equilibration step

por Yen, Hsin-Yung, Abramsson, Mia L., Agasid, Mark T., Lama, Dilraj, Gault, Joseph, Liko, Idlir, Kaldmäe, Margit, Saluri, Mihkel, Qureshi, Abdul Aziz, Suades, Albert, Drew, David, Degiacomi, Matteo T., Marklund, Erik G., Allison, Timothy M., Robinson, Carol V., Landreh, Michael
Publicado 2022