Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System

por Mavromatis, Konstantinos, Chu, Ken, Ivanova, Natalia, Hooper, Sean D., Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2009

Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool

por Dalevi, Daniel, DeSantis, Todd Z, Fredslund, Jakob, Andersen, Gary L, Markowitz, Victor M, Hugenholtz, Philip
Publicado 2007

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

por Mavromatis, Konstantinos, Ivanova, Natalia N., Chen, I-Min A., Szeto, Ernest, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2009

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

por Liolios, Konstantinos, Chen, I-Min A., Mavromatis, Konstantinos, Tavernarakis, Nektarios, Hugenholtz, Philip, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2010

Improving Microbial Genome Annotations in an Integrated Database Context

por Chen, I-Min A., Markowitz, Victor M., Chu, Ken, Anderson, Iain, Mavromatis, Konstantinos, Kyrpides, Nikos C., Ivanova, Natalia N.
Publicado 2013

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

por Pagani, Ioanna, Liolios, Konstantinos, Jansson, Jakob, Chen, I-Min A., Smirnova, Tatyana, Nosrat, Bahador, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2012

Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, I...

por Susanti, Dwi, Johnson, Eric F., Lapidus, Alla, Han, James, Reddy, T. B. K., Pilay, Manoj, Ivanova, Natalia N., Markowitz, Victor M., Woyke, Tanja, Kyrpides, Nikos C., Mukhopadhyay, Biswarup
Publicado 2016

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

por Markowitz, Victor M., Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Chu, Ken, Chen, I-Min A., Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2008

The integrated microbial genomes system: an expanding comparative analysis resource

por Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Grechkin, Yuri, Ratner, Anna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2010

The integrated microbial genomes (IMG) system

por Markowitz, Victor M., Korzeniewski, Frank, Palaniappan, Krishna, Szeto, Ernest, Werner, Greg, Padki, Anu, Zhao, Xueling, Dubchak, Inna, Hugenholtz, Philip, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia, Kyrpides, Nikos C.
Publicado 2006

High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass

por Laviad, Sivan, Lapidus, Alla, Copeland, Alex, Reddy, TBK, Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia N, Markowitz, Victor M, Pukall, Rüdiger, Klenk, Hans-Peter, Woyke, Tanja, Kyrpides, Nikos C, Halpern, Malka
Publicado 2015

High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotale...

por Ntougias, Spyridon, Lapidus, Alla, Copeland, Alex, Reddy, T. B. K., Pati, Amrita, Ivanova, Natalia N., Markowitz, Victor M., Klenk, Hans-Peter, Woyke, Tanja, Fasseas, Constantinos, Kyrpides, Nikos C., Zervakis, Georgios I.
Publicado 2015

IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project

por Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Jacob, Biju, Ratner, Anna, Liolios, Konstantinos, Pagani, Ioanna, Huntemann, Marcel, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2012

IMG/M: a data management and analysis system for metagenomes

por Markowitz, Victor M., Ivanova, Natalia N., Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, Chen, I-Min A., Grechkin, Yuri, Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Hugenholtz, Philip, Kyrpides, Nikos C.
Publicado 2008

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

por Huntemann, Marcel, Ivanova, Natalia N., Mavromatis, Konstantinos, Tripp, H. James, Paez-Espino, David, Palaniappan, Krishnaveni, Szeto, Ernest, Pillay, Manoj, Chen, I-Min A., Pati, Amrita, Nielsen, Torben, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2015

Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

por Huntemann, Marcel, Ivanova, Natalia N., Mavromatis, Konstantinos, Tripp, H. James, Paez-Espino, David, Palaniappan, Krishnaveni, Szeto, Ernest, Pillay, Manoj, Chen, I-Min A., Pati, Amrita, Nielsen, Torben, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2016

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

por Chen, I-Min A., Markowitz, Victor M., Palaniappan, Krishna, Szeto, Ernest, Chu, Ken, Huang, Jinghua, Ratner, Anna, Pillay, Manoj, Hadjithomas, Michalis, Huntemann, Marcel, Mikhailova, Natalia, Ovchinnikova, Galina, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2016

IMG: the integrated microbial genomes database and comparative analysis system

por Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Grechkin, Yuri, Ratner, Anna, Jacob, Biju, Huang, Jinghua, Williams, Peter, Huntemann, Marcel, Anderson, Iain, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2012

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

por Hadjithomas, Michalis, Chen, I-Min Amy, Chu, Ken, Ratner, Anna, Palaniappan, Krishna, Szeto, Ernest, Huang, Jinghua, Reddy, T. B. K., Cimermančič, Peter, Fischbach, Michael A., Ivanova, Natalia N., Markowitz, Victor M., Kyrpides, Nikos C., Pati, Amrita
Publicado 2015

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

por Huntemann, Marcel, Ivanova, Natalia N., Mavromatis, Konstantinos, Tripp, H. James, Paez-Espino, David, Tennessen, Kristin, Palaniappan, Krishnaveni, Szeto, Ernest, Pillay, Manoj, Chen, I-Min A., Pati, Amrita, Nielsen, Torben, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2016