Efficient exact motif discovery

por Marschall, Tobias, Rahmann, Sven
Publicado 2009

Fully-sensitive seed finding in sequence graphs using a hybrid index

por Ghaffaari, Ali, Marschall, Tobias
Publicado 2019

GraphAligner: rapid and versatile sequence-to-graph alignment

por Rautiainen, Mikko, Marschall, Tobias
Publicado 2020

MBG: Minimizer-based sparse de Bruijn Graph construction

por Rautiainen, Mikko, Marschall, Tobias
Publicado 2021

Constructing founder sets under allelic and non-allelic homologous recombination

por Bonnet, Konstantinn, Marschall, Tobias, Doerr, Daniel
Publicado 2023

Allele detection using k-mer-based sequencing error profiles

por Ashraf, Hufsah, Ebler, Jana, Marschall, Tobias
Publicado 2023

Read-based phasing of related individuals

por Garg, Shilpa, Martin, Marcel, Marschall, Tobias
Publicado 2016

SNP and indel frequencies at transcription start sites and at canonical and alternative translation initiation sites in the human genome

por Neininger, Kerstin, Marschall, Tobias, Helms, Volkhard
Publicado 2019

Bit-parallel sequence-to-graph alignment

por Rautiainen, Mikko, Mäkinen, Veli, Marschall, Tobias
Publicado 2019

BubbleGun: enumerating bubbles and superbubbles in genome graphs

por Dabbaghie, Fawaz, Ebler, Jana, Marschall, Tobias
Publicado 2022

Varlociraptor: enhancing sensitivity and controlling false discovery rate in somatic indel discovery

por Köster, Johannes, Dijkstra, Louis J., Marschall, Tobias, Schönhuth, Alexander
Publicado 2020

Haplotype-aware diplotyping from noisy long reads

por Ebler, Jana, Haukness, Marina, Pesout, Trevor, Marschall, Tobias, Paten, Benedict
Publicado 2019

ASHLEYS: automated quality control for single-cell Strand-seq data

por Gros, Christina, Sanders, Ashley D, Korbel, Jan O, Marschall, Tobias, Ebert, Peter
Publicado 2021

Discovering motifs that induce sequencing errors

por Allhoff, Manuel, Schönhuth, Alexander, Martin, Marcel, Costa, Ivan G, Rahmann, Sven, Marschall, Tobias
Publicado 2013

Viral Quasispecies Assembly via Maximal Clique Enumeration

por Töpfer, Armin, Marschall, Tobias, Bull, Rowena A., Luciani, Fabio, Schönhuth, Alexander, Beerenwinkel, Niko
Publicado 2014

A graph-based approach to diploid genome assembly

por Garg, Shilpa, Rautiainen, Mikko, Novak, Adam M, Garrison, Erik, Durbin, Richard, Marschall, Tobias
Publicado 2018

PWHATSHAP: efficient haplotyping for future generation sequencing

por Bracciali, Andrea, Aldinucci, Marco, Patterson, Murray, Marschall, Tobias, Pisanti, Nadia, Merelli, Ivan, Torquati, Massimo
Publicado 2016

Mapping proteins in the presence of paralogs using units of coevolution

por El-Kebir, Mohammed, Marschall, Tobias, Wohlers, Inken, Patterson, Murray, Heringa, Jaap, Schönhuth, Alexander, Klau, Gunnar W
Publicado 2013

Genetic polyploid phasing from low-depth progeny samples

por Schrinner, Sven, Serra Mari, Rebecca, Finkers, Richard, Arens, Paul, Usadel, Björn, Marschall, Tobias, Klau, Gunnar W.
Publicado 2022

SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines

por Leung, Wai Yi, Marschall, Tobias, Paudel, Yogesh, Falquet, Laurent, Mei, Hailiang, Schönhuth, Alexander, Maoz (Moss), Tiffanie Yael
Publicado 2015