pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks

por Budach, Stefan, Marsico, Annalisa
Publicado 2018

Functional impacts of non-coding RNA processing on enhancer activity and target gene expression

por Ntini, Evgenia, Marsico, Annalisa
Publicado 2019

Principles of microRNA Regulation Revealed Through Modeling microRNA Expression Quantitative Trait Loci

por Budach, Stefan, Heinig, Matthias, Marsico, Annalisa
Publicado 2016

PureCLIP: capturing target-specific protein–RNA interaction footprints from single-nucleotide CLIP-seq data

por Krakau, Sabrina, Richard, Hugues, Marsico, Annalisa
Publicado 2017

Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility

por Salvatore, Marco, Horlacher, Marc, Marsico, Annalisa, Winther, Ole, Andersson, Robin
Publicado 2023

ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data

por Heller, David, Krestel, Ralf, Ohler, Uwe, Vingron, Martin, Marsico, Annalisa
Publicado 2017

MeMotif: a database of linear motifs in α-helical transmembrane proteins

por Marsico, Annalisa, Scheubert, Kerstin, Tuukkanen, Anne, Henschel, Andreas, Winter, Christof, Winnenburg, Rainer, Schroeder, Michael
Publicado 2010

Structural fragment clustering reveals novel structural and functional motifs in α-helical transmembrane proteins

por Marsico, Annalisa, Henschel, Andreas, Winter, Christof, Tuukkanen, Anne, Vassilev, Boris, Scheubert, Kerstin, Schroeder, Michael
Publicado 2010

Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis

por Thiel, Denise, Conrad, Nataša Djurdjevac, Ntini, Evgenia, Peschutter, Ria X., Siebert, Heike, Marsico, Annalisa
Publicado 2019

Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin

por Ntini, Evgenia, Louloupi, Annita, Liz, Julia, Muino, Jose M., Marsico, Annalisa, Ørom, Ulf Andersson Vang
Publicado 2018

TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs

por Bressin, Annkatrin, Schulte-Sasse, Roman, Figini, Davide, Urdaneta, Erika C, Beckmann, Benedikt M, Marsico, Annalisa
Publicado 2019

Integrated analysis of Xist upregulation and X-chromosome inactivation with single-cell and single-allele resolution

por Pacini, Guido, Dunkel, Ilona, Mages, Norbert, Mutzel, Verena, Timmermann, Bernd, Marsico, Annalisa, Schulz, Edda G.
Publicado 2021

A systematic benchmark of machine learning methods for protein–RNA interaction prediction

por Horlacher, Marc, Cantini, Giulia, Hesse, Julian, Schinke, Patrick, Goedert, Nicolas, Londhe, Shubhankar, Moyon, Lambert, Marsico, Annalisa
Publicado 2023

PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs

por Marsico, Annalisa, Huska, Matthew R, Lasserre, Julia, Hu, Haiyang, Vucicevic, Dubravka, Musahl, Anne, Orom, Ulf Andersson, Vingron, Martin
Publicado 2013

Network Embedding Across Multiple Tissues and Data Modalities Elucidates the Context of Host Factors Important for COVID-19 Infection

por Hu, Yue, Rehawi, Ghalia, Moyon, Lambert, Gerstner, Nathalie, Ogris, Christoph, Knauer-Arloth, Janine, Bittner, Florian, Marsico, Annalisa, Mueller, Nikola S.
Publicado 2022

Towards in silico CLIP-seq: predicting protein-RNA interaction via sequence-to-signal learning

por Horlacher, Marc, Wagner, Nils, Moyon, Lambert, Kuret, Klara, Goedert, Nicolas, Salvatore, Marco, Ule, Jernej, Gagneur, Julien, Winther, Ole, Marsico, Annalisa
Publicado 2023

A Data-Mining Approach to Identify NF-kB-Responsive microRNAs in Tissues Involved in Inflammatory Processes: Potential Relevance in Age-Related Diseases

por Micolucci, Luigina, Matacchione, Giulia, Albertini, Maria Cristina, Marra, Massimo, Ramini, Deborah, Giuliani, Angelica, Sabbatinelli, Jacopo, Procopio, Antonio Domenico, Olivieri, Fabiola, Marsico, Annalisa, Monsurrò, Vladia
Publicado 2023

A computational map of the human-SARS-CoV-2 protein–RNA interactome predicted at single-nucleotide resolution

por Horlacher, Marc, Oleshko, Svitlana, Hu, Yue, Ghanbari, Mahsa, Cantini, Giulia, Schinke, Patrick, Vergara, Ernesto Elorduy, Bittner, Florian, Mueller, Nikola S, Ohler, Uwe, Moyon, Lambert, Marsico, Annalisa
Publicado 2023

Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features

por Barros de Andrade e Sousa, Lisa, Jonkers, Iris, Syx, Laurène, Dunkel, Ilona, Chaumeil, Julie, Picard, Christel, Foret, Benjamin, Chen, Chong-Jian, Lis, John T., Heard, Edith, Schulz, Edda G., Marsico, Annalisa
Publicado 2019

Identification of 170 New Long Noncoding RNAs in Schistosoma mansoni

por Oliveira, Victor F., Moares, Lauro A. G., Mota, Ester A., Jannotti-Passos, Liana K., Coelho, Paulo M. Z., Mattos, Ana C. A., Couto, Flávia F. B., Caffrey, Brian E., Marsico, Annalisa, Guerra-Sá, Renata
Publicado 2018