Pleione: A tool for statistical and multi-objective calibration of Rule-based models

por Santibáñez, Rodrigo, Garrido, Daniel, Martin, Alberto J. M.
Publicado 2019

Atlas: automatic modeling of regulation of bacterial gene expression and metabolism using rule-based languages

por Santibáñez, Rodrigo, Garrido, Daniel, Martin, Alberto J M
Publicado 2020

Editorial: Systems modeling: Approaches and applications–Volume II

por Garrido, Daniel, Martín, Alberto J. M., Pérez-Rueda, Ernesto
Publicado 2022

Benefiting from the intrinsic role of epigenetics to predict patterns of CTCF binding

por Villaman, Camilo, Pollastri, Gianluca, Saez, Mauricio, Martin, Alberto J.M.
Publicado 2023

Unraveling patient heterogeneity in complex diseases through individualized co-expression networks: a perspective

por Latapiat, Verónica, Saez, Mauricio, Pedroso, Inti, Martin, Alberto J. M.
Publicado 2023

Corrigendum: Unraveling patient heterogeneity in complex diseases through individualized co-expression networks: a perspective

por Latapiat, Verόnica, Saez, Mauricio, Pedroso, Inti, Martin, Alberto J. M.
Publicado 2023

RIP-MD: a tool to study residue interaction networks in protein molecular dynamics

por Contreras-Riquelme, Sebastián, Garate, Jose-Antonio, Perez-Acle, Tomas, Martin, Alberto J.M.
Publicado 2018

Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium

por Martin, Alberto J.M., Serebrinsky-Duek, Kineret, Riquelme, Erick, Saa, Pedro A., Garrido, Daniel
Publicado 2023

Graphlet Based Metrics for the Comparison of Gene Regulatory Networks

por Martin, Alberto J. M., Dominguez, Calixto, Contreras-Riquelme, Sebastián, Holmes, David S., Perez-Acle, Tomas
Publicado 2016

Homology-based reconstruction of regulatory networks for bacterial and archaeal genomes

por Romero, Luis, Contreras-Riquelme, Sebastian, Lira, Manuel, Martin, Alberto J. M., Perez-Rueda, Ernesto
Publicado 2022

PANADA: Protein Association Network Annotation, Determination and Analysis

por Martin, Alberto J. M., Walsh, Ian, Domenico, Tomás Di, Mičetić, Ivan, Tosatto, Silvio C. E.
Publicado 2013

CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs

por Walsh, Ian, Martin, Alberto J. M., Di Domenico, Tomàs, Vullo, Alessandro, Pollastri, Gianluca, Tosatto, Silvio C. E.
Publicado 2011

Automated generation of context-specific gene regulatory networks with a weighted approach in Drosophila melanogaster

por Murgas, Leandro, Contreras-Riquelme, Sebastian, Martínez-Hernandez, J. Eduardo, Villaman, Camilo, Santibáñez, Rodrigo, Martin, Alberto J. M.
Publicado 2021

GPR43 stimulation on TCRαβ(+) intraepithelial colonic lymphocytes inhibits the recruitment of encephalitogenic T-cells into the central nervous system and attenuates the developmen...

por Prado, Carolina, Espinoza, Alexandra, Martínez-Hernández, J. Eduardo, Petrosino, Joseph, Riquelme, Erick, Martin, Alberto J. M., Pacheco, Rodrigo
Publicado 2023

Filtering of Data-Driven Gene Regulatory Networks Using Drosophila melanogaster as a Case Study

por Cuesta-Astroz, Yesid, Gischkow Rucatti, Guilherme, Murgas, Leandro, SanMartín, Carol D., Sanhueza, Mario, Martin, Alberto J. M.
Publicado 2021

First metagenomic analysis of the Andean condor (Vultur gryphus) gut microbiome reveals microbial diversity and wide resistome

por Martinez-Hernandez, J. Eduardo, Berrios, Pablo, Santibáñez, Rodrigo, Cuesta Astroz, Yesid, Sanchez, Carolina, Martin, Alberto J. M., Trombert, Annette N.
Publicado 2023

Transcriptional and Histone Acetylation Changes Associated with CRE Elements Expose Key Factors Governing the Regulatory Circuit in the Early Stage of Huntington’s Disease Models

por Arancibia-Opazo, Sandra, Contreras-Riquelme, J. Sebastián, Sánchez, Mario, Cisternas-Olmedo, Marisol, Vidal, René L., Martin, Alberto J. M., Sáez, Mauricio A.
Publicado 2023

Network-Based Approaches Reveal Potential Therapeutic Targets for Host-Directed Antileishmanial Therapy Driving Drug Repurposing

por Martinez-Hernandez, J. Eduardo, Hammoud, Zaynab, de Sousa, Alessandra Mara, Kramer, Frank, do Monte-Neto, Rubens L., Maracaja-Coutinho, Vinicius, Martin, Alberto J. M.
Publicado 2021

Transcriptional profiling of embryos lacking the lipoprotein receptor SR-B1 reveals a regulatory circuit governing a neurodevelopmental or metabolic decision during neural tube clo...

por Santander, Nicolás, Lizama, Carlos, Murgas, Leandro, Contreras, Sebastián, Martin, Alberto J. M., Molina, Paz, Quiroz, Alonso, Rivera, Katherine, Salas-Pérez, Francisca, Godoy, Alejandro, Rigotti, Attilio, Busso, Dolores
Publicado 2018

Transcriptional Signatures and Network-Based Approaches Identified Master Regulators Transcription Factors Involved in Experimental Periodontitis Pathogenesis

por Vicencio, Emiliano, Nuñez-Belmar, Josefa, Cardenas, Juan P., Cortés, Bastian I., Martin, Alberto J. M., Maracaja-Coutinho, Vinicius, Rojas, Adolfo, Cafferata, Emilio A., González-Osuna, Luis, Vernal, Rolando, Cortez, Cristian
Publicado 2023